CX675639

Overview
NameCX675639
Unique NameCX675639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3495 contig Csv1_Contig3495:671..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: SYM_ARATH (Probable methionyl-tRNA synthetase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.617e-69
Identity = 129/165 (78.18%), Postives = 143/165 (86.67%), Query Frame = 1
Query:   94 EISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 588
            EI++ARLDIRVGKI K +KHP ADALYVEEIDVG  + RTVVSGLVK+IPLEEMQ RMVCVLCNLKP  MR I S AMVL AS+SD +KVELVEPPK+A IGERV FPGFEGEPDDVLNPKKKVWET+ VDL+T   LVACYKD+PFTTSAG+C VSSI +G+IR
Sbjct:  633 EITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.644e-67
Identity = 123/167 (73.65%), Postives = 138/167 (82.63%), Query Frame = 1
Query:   88 EPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 588
            E ++++A+LDIRVG I K QKHPDAD+LYVEEIDVGE  PRTVVSGLVK IPLEEMQ R VCVLCNLKPVAMRGIKSHAMVL AS  D+TKVELVEPP+SA +GERV F G+ GEP+  LN K K WE +  DLH+N ELVACYKD+PFTTSAG+C V SI SG IR
Sbjct:  635 EVDVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: AIMP1_HUMAN (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.263e-50
Identity = 92/165 (55.76%), Postives = 121/165 (73.33%), Query Frame = 1
Query:   97 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 588
            I ++RLD+R+G I   +KHPDAD+LYVEE+DVGE+ PRTVVSGLV H+PLE+MQ RMV +LCNLKP  MRG+ S AMV+CAS+ +  K+E++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK +PF     G+C   ++ +  I+
Sbjct:  150 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 312          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.650e-50
Identity = 92/165 (55.76%), Postives = 121/165 (73.33%), Query Frame = 1
Query:   97 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 588
            + ++RLD+R+G+I  V+KHPDAD+LYVEE+DVGE  PRTV+SGLV H+PL++MQ RMV +LCNLKP  MRGI S AMV+CAS+ +  KVE++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK  PF     G+C   ++ +  I+
Sbjct:  197 VDVSRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFEVKGKGVCRAQTMANSGIK 359          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: AIMP1_MOUSE (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.397e-49
Identity = 93/165 (56.36%), Postives = 118/165 (71.52%), Query Frame = 1
Query:   97 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 588
            I  +RLD+R+G I   +KHPDAD+LYVEE+DVGE  PRTVVSGLV H+PLE+MQ RMV +LCNLKP  MRG+ S AMV+CAS+ +  KVE++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK  PF     G+C   ++ +  I+
Sbjct:  148 IDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGIK 310          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: SYYC_BOVIN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4)

HSP 1 Score: 177.178 bits (448), Expect = 6.714e-44
Identity = 93/169 (55.03%), Postives = 120/169 (71.01%), Query Frame = 1
Query:   88 EPEISI-ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 585
            EPE  I +RLDIRVGK+  V KHPDAD+LYVE+IDVGE +PRTVVSGLV+ +P EE+Q+R+V VLCNLKP  MRG+KS  M+LCAS    N KVE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  359 EPEEVIPSRLDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVSCKSLKGGNI 527          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: SYYC_CHICK (Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.332e-43
Identity = 90/169 (53.25%), Postives = 122/169 (72.19%), Query Frame = 1
Query:   88 EPEISI-ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCAST-SDNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 585
            EPE  + +RLDIRVGK+  V+KHPDAD+LYVE+IDVGE +PRTVVSGLV+ +P E++Q+R+V +LCNLKP  MRG++S  MVLCAS+  +  +VE ++PP     GERV   G+E GEPDD L PKKKV+E +Q D   + + +A +K+  F T  G  +  S++ GSI
Sbjct:  358 EPETIVPSRLDIRVGKVVSVEKHPDADSLYVEKIDVGEPEPRTVVSGLVQFVPKEQLQDRLVVLLCNLKPQKMRGVESQGMVLCASSVGEPRQVEPLDPPAECCAGERVYVEGYEDGEPDDELKPKKKVFEKLQADFRISEDCIAQWKERNFLTKLGSISCKSLKGGSI 526          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: SYYC_PONAB (Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 4.352e-43
Identity = 92/169 (54.44%), Postives = 121/169 (71.60%), Query Frame = 1
Query:   88 EPEISI-ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 585
            EPE  I +RLDIRVGKI  V+KHPDAD+LYVE+IDVGE +PRTVVSGLV+ +P EE+Q+R+V VLCNLKP  MRG++S  M+LCAS    N +VE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  359 EPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 527          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: SYYC_DANRE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 5.684e-43
Identity = 91/168 (54.17%), Postives = 123/168 (73.21%), Query Frame = 1
Query:   88 EPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCAS-TSDNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 585
            + E+  +RLDIRVGK+  V+KHPDAD+LY+E+IDVGE QPRTVVSGLV +I  E++Q+R+V +LCNLKP  MRGI+S AMVLCAS   +  KVE ++PP+ +  G+RV   G+E G+PDD L PKKKV+E +QVDL  + E VA +K+    T  G  T  +++ G+I
Sbjct:  361 DDEVIPSRLDIRVGKVISVEKHPDADSLYLEKIDVGEEQPRTVVSGLVAYITEEQLQDRLVVLLCNLKPQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRITCKTLKGGNI 528          
BLAST of CX675639 vs. ExPASy Swiss-Prot
Match: SYMC_CAEEL (Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.684e-43
Identity = 86/145 (59.31%), Postives = 108/145 (74.48%), Query Frame = 1
Query:   97 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIP 531
            I + RLD+RVG+I K +KHPDADALYVE+IDVGE  PRTVVSGLV+H+PL++MQ R+V VLCNLKP  MRG++S AMV+CAS+ D  KVE++E P  +K G  V  P +   PD+ LNPKKK+WETV  DL  + E  A +K  P
Sbjct:  755 IDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRLVVVLCNLKPAKMRGVESRAMVMCASSPD--KVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKGQP 897          
The following BLAST results are available for this feature:
BLAST of CX675639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
SYM_ARATH4.617e-6978.18Probable methionyl-tRNA synthetase OS=Arabidopsis ... [more]
SYM_ORYSJ5.644e-6773.65Probable methionyl-tRNA synthetase OS=Oryza sativa... [more]
AIMP1_HUMAN1.263e-5055.76Aminoacyl tRNA synthetase complex-interacting mult... [more]
AIMP1_CRIGR1.650e-5055.76Aminoacyl tRNA synthetase complex-interacting mult... [more]
AIMP1_MOUSE1.397e-4956.36Aminoacyl tRNA synthetase complex-interacting mult... [more]
SYYC_BOVIN6.714e-4455.03Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus... [more]
SYYC_CHICK3.332e-4353.25Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gal... [more]
SYYC_PONAB4.352e-4354.44Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abel... [more]
SYYC_DANRE5.684e-4354.17Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio reri... [more]
SYMC_CAEEL5.684e-4359.31Methionyl-tRNA synthetase, cytoplasmic OS=Caenorha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63F12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63F12-K23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675639 ID=CX675639; Name=CX675639; organism=Citrus sinensis; type=EST; length=655bp
AAGAAAACCAAAATTTCAGTAGATGGTGGTGGAAAGAAACAAAAGTCAGC
AAAATCTACAGCTGGAGCCAAATCAAAAACCACTGCTGAACCAGAAATTT
CGATTGCAAGACTTGATATCCGTGTTGGAAAAATTACAAAAGTTCAAAAA
CATCCTGATGCCGATGCACTGTATGTAGAAGAAATTGATGTGGGTGAAGT
ACAGCCTCGAACAGTAGTTAGTGGCCTTGTCAAGCATATACCTCTTGAAG
AGATGCAGGAGAGAATGGTCTGTGTTCTTTGCAATCTGAAACCAGTAGCA
ATGAGGGGAATCAAATCACATGCAATGGTTCTTTGTGCTTCAACCAGTGA
TAACACCAAGGTTGAATTGGTTGAGCCACCAAAATCTGCAAAAATTGGAG
AAAGAGTTGCATTTCCTGGGTTTGAAGGCGAGCCTGATGATGTGTTAAAC
CCTAAGAAGAAGGTTTGGGAGACAGTGCAAGTGGATTTACACACTAACAC
CGAGCTGGTGGCCTGCTATAAAGATATTCCTTTCACGACATCAGCTGGTA
TTTGCACTGTTTCCTCCATTCAAAGTGGGTCTATACGGTAGCTCGACTTC
TTCAATCATTGGAAAGCGAGAATTCCTAATCTTCTGATTGTGTTAACTTT
GCTTT
back to top