CX675638

Overview
NameCX675638
Unique NameCX675638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3495 contig Csv1_Contig3495:890..1587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: SYM_ARATH (Probable methionyl-tRNA synthetase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 94/122 (77.05%), Postives = 105/122 (86.07%), Query Frame = -1
Query:  333 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 698
            GLVK+IPL EMQ RMVCVLCNLKP  +R I S AMVL AS+SD +KVELVEPPK+A IGERV FPGFEGEPDDVLNPKKKVWET+ VDL+T   LVACYKD+PFTTSAG+C VSSI +G+IR
Sbjct:  676 GLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = -1
Query:  333 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 698
            GLVK IPL EMQ R VCVLCNLKPVA+RGIKSHAMVL AS  D+TKVELVEPP+SA +GERV F G+ GEP+  LN K K WE +  DLH+N ELVACYKD+PFTTSAG+C V SI SG IR
Sbjct:  680 GLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: AIMP1_HUMAN (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = -1
Query:  333 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 698
            GLV H+PL +MQ RMV +LCNLKP  +RG+ S AMV+CAS+ +  K+E++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK +PF     G+C   ++ +  I+
Sbjct:  192 GLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 312          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: AIMP1_MOUSE (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = -1
Query:  333 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 698
            GLV H+PL +MQ RMV +LCNLKP  +RG+ S AMV+CAS+ +  KVE++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK  PF     G+C   ++ +  I+
Sbjct:  190 GLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGIK 310          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = -1
Query:  333 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 698
            GLV H+PL +MQ RMV +LCNLKP  +RGI S AMV+CAS+ +  KVE++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK  PF     G+C   ++ +  I+
Sbjct:  239 GLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFEVKGKGVCRAQTMANSGIK 359          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: G4P1_YEAST (GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae GN=ARC1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 61/102 (59.80%), Postives = 69/102 (67.65%), Query Frame = -1
Query:  396 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGE-PDDVLNPKKKVWETVQVDLHTNTELVACYKD 698
            GLVKH PL  MQER V V+CNLKPV +RGIKS AMVLC S  D  KVE VEPPK +K G++V F GF  E P   LNPKKK+WE +Q    TN  L   +KD
Sbjct:  247 GLVKHFPLDAMQERYVVVVCNLKPVNMRGIKSTAMVLCGSNDD--KVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTTNDGLEVIFKD 346          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: YLF4_SCHPO (Uncharacterized tRNA-binding protein C30C2.04 OS=Schizosaccharomyces pombe GN=SPAC30C2.04 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 56/130 (43.08%), Postives = 83/130 (63.85%), Query Frame = -1
Query:  336 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKD--------IPFTTSAGICTVSSIQSGSI 698
            GLVK+IPL +MQ+R V V+ NLKPV +R +KS AMV CAS+ D + VE V PP++A+IG+R+ F GF+  EP+  LNPK+K+WE +Q    +  +L+  YKD        +      G C   ++ +G++
Sbjct:  320 GLVKYIPLEQMQQRKVIVVANLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGFDTEEPEAQLNPKRKIWEAIQPGFTSGEDLICGYKDESGLHRLFVKGKKDLGFCKAQTVVNGTL 449          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: SYYC_BOVIN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 57/123 (46.34%), Postives = 80/123 (65.04%), Query Frame = -1
Query:  336 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 698
            GLV+ +P  E+Q+R+V VLCNLKP  +RG+KS  M+LCAS    N KVE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  405 GLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVSCKSLKGGNI 527          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: SYMC_CAEEL (Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = -1
Query:  390 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIP 698
            GLV+H+PL +MQ R+V VLCNLKP  +RG++S AMV+CAS+ D  KVE++E P  +K G  V  P +   PD+ LNPKKK+WETV  DL  + E  A +K  P
Sbjct:  797 GLVRHVPLDQMQNRLVVVLCNLKPAKMRGVESRAMVMCASSPD--KVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKGQP 897          
BLAST of CX675638 vs. ExPASy Swiss-Prot
Match: SYYC_DANRE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 58/123 (47.15%), Postives = 83/123 (67.48%), Query Frame = -1
Query:  336 GLVKHIPLAEMQERMVCVLCNLKPVAVRGIKSHAMVLCAS-TSDNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 698
            GLV +I   ++Q+R+V +LCNLKP  +RGI+S AMVLCAS   +  KVE ++PP+ +  G+RV   G+E G+PDD L PKKKV+E +QVDL  + E VA +K+    T  G  T  +++ G+I
Sbjct:  406 GLVAYITEEQLQDRLVVLLCNLKPQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRITCKTLKGGNI 528          
The following BLAST results are available for this feature:
BLAST of CX675638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SYM_ARATH2.039e-4977.05Probable methionyl-tRNA synthetase OS=Arabidopsis ... [more]
SYM_ORYSJ6.140e-4672.13Probable methionyl-tRNA synthetase OS=Oryza sativa... [more]
AIMP1_HUMAN2.504e-3150.41Aminoacyl tRNA synthetase complex-interacting mult... [more]
AIMP1_MOUSE5.579e-3151.22Aminoacyl tRNA synthetase complex-interacting mult... [more]
AIMP1_CRIGR7.287e-3152.03Aminoacyl tRNA synthetase complex-interacting mult... [more]
G4P1_YEAST1.738e-2459.80GU4 nucleic-binding protein 1 OS=Saccharomyces cer... [more]
YLF4_SCHPO2.270e-2443.08Uncharacterized tRNA-binding protein C30C2.04 OS=S... [more]
SYYC_BOVIN1.127e-2346.34Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus... [more]
SYMC_CAEEL3.279e-2352.43Methionyl-tRNA synthetase, cytoplasmic OS=Caenorha... [more]
SYYC_DANRE9.539e-2347.15Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio reri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63F12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63F12-K23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675638 ID=CX675638; Name=CX675638; organism=Citrus sinensis; type=EST; length=698bp
TTTTTTTTTAGTGATTAATTTCGGCAGATTCCATAAAATAATCATGAAAA
GCTGAATCTGAAGCTTGGGTTCAAACCCTTGACATAAATCCTTGTATATA
AGATCGTGAATTCAAACTGCTCATTGCTCAAGGCAATTGGGTTTTCTTCT
AATGAGGGGAAAAGGTAACACTAATGAAGCCACGACATAATCTAGTCTAC
TACTGACACAAAATTCTTGTCCACATACAACATTTCACACAACGAGAAAA
AGTCACTAGGATAAAAAAGCAAAGTTAACACAATCAGAAGATTAGGAATT
CTCGCTTTCCAATGATTGAAGAAGTCGAGCTACCGTATAGACCCACTTTG
AATGGAGGAAACAGTGCAAATACCAGCTGATGTCGTGAAAGGAATATCTT
TATAGCAGGCCACCAGCTCGGTGTTAGTGTGTAAATCCACTTGCACTGTC
TCCCAAACCTTCTTCTTAGGGTTTAACACATCATCAGGCTCGCCTTCAAA
CCCAGGAAATGCAACTCTTTCTCCGATTTTTGCAGATTTTGGTGGCTCAA
CCAATTCAACCTTGGTGTTATCACTGGTTGAAGCACAAAGAACCATTGCA
TGTGATTTGATTCCCCTCACTGCTACAGGTTTCAGATTGCAAAGAACACA
CACCATTCTCTCCTGCATCTCTGCAAGAGGTATATGCTTGACAAGGCC
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