CK939229

Overview
NameCK939229
Unique NameCK939229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939229 vs. ExPASy Swiss-Prot
Match: LRE_ARATH (GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.115e-41
Identity = 74/124 (59.68%), Postives = 96/124 (77.42%), Query Frame = 3 
Query:  138 VFLSIFLLFILMGLSSATFISDGIFESH-AFTGRNLLQAKKACPVNFEFLNYTIITSKCKGPQFPPDKCCSAFKEFACPYADQINDLTTDCATTMFSYINLYGKYPPGLFASECLKGKRGLECP 506
            + L  FL+ +L+ LSS++ ISDG+FES  + +GRNL  AKK C VNFE+++Y ++T +CKGP FP  +CCSAFKEFACPY  QIND+ +DCA TMFSY+N+YG YP GLFA+EC + K GL CP
Sbjct:    4 ILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCKGPAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGLVCP 127
The following BLAST results are available for this feature:
BLAST of CK939229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LRE_ARATH7.115e-4159.68GPI-anchored protein LORELEI OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004432_F10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939229 ID=CK939229; Name=CK939229; organism=Citrus sinensis; type=EST; length=668bp
GGGGGTCGCTGTCTGTTGCATACTGGTTTTGTACAAGCGTGTAAAAAGCT
TCTATCTTTTTTGAAGAGAATAGGTGGGAGCACAAAAAAAATTGGATCTT
TTCTGGTGCTGTGAGAGAAATGGTGGAGTTCAACAGAGTGTTTCTATCTA
TTTTTCTTTTGTTTATTTTGATGGGTTTGTCTTCTGCAACTTTCATTTCA
GATGGTATCTTTGAATCGCACGCTTTTACTGGCAGAAATCTTCTCCAGGC
TAAGAAAGCATGCCCCGTGAATTTCGAGTTTCTGAACTACACAATCATCA
CAAGCAAATGCAAAGGACCCCAGTTTCCACCTGACAAATGCTGTAGTGCT
TTTAAGGAATTTGCTTGTCCTTATGCAGATCAGATTAATGACTTGACGAC
AGACTGCGCTACAACCATGTTCAGCTACATTAACCTGTATGGGAAATACC
CTCCTGGTCTTTTTGCCAGCGAGTGTCTGAAAGGGAAGCGAGGTCTTGAA
TGTCCTGCATCGGCACCAACTCAGTCGGCAAATGCAGATCACACGTTAAA
AAAACCCAATTAAGAATTTAAAATTTTTTTGACGTTTTTGTATTTATCTA
AACATACAATCTCGTAATGAGATTTGCTTTATAACAAATAAAATATTGTT
CTTGTNAAAAAAAAAAAA
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