CK939226

Overview
NameCK939226
Unique NameCK939226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAMG 121
            LTDPNPDDPLVPEIAHMYKTDR+KYETTARS TQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.807e-15
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAMG 121
            LTDPNPDDPLVPEIAHMYKTDRSKYE+TARS TQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.481e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAMG 121
            LTDPNPDDPLVPEIAHMYKTDR+KYE+TARS TQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.889e-14
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAMG 121
            LTDPNPDDPLVPEIAHMYKTD++KYE+TARS TQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.467e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAMG 121
            LTDPNPDDPLVPEIAHMYKTDR+KYE TAR+ TQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.209e-14
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAMG 121
            LTDPNPDDPLVPEIAHMYKTD++KYE+TAR+ TQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAMG 121
            LTDPNPDDPLVPEIAH+YKTDR KYE+TA+S TQKYAMG
Sbjct:  110 LTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.309e-12
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAMG 121
            LTDPNP+DPLVPEIAH+YK D+SKYE+TA+  TQKYAMG
Sbjct:  111 LTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAM 118
            LTDPNPDDPLVPEIAH+YKTD++KYE  ARS TQKYA+
Sbjct:  110 LTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CK939226 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 2
Query:    5 LTDPNPDDPLVPEIAHMYKTDRSKYETTARS*TQKYAM 118
            LTDPNPDDPLVPEIAH+YKTDRS+YE +AR  T+KYA+
Sbjct:  110 LTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of CK939226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
UBC4_SOLLC2.915e-1594.87Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH3.807e-1594.87Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC28_ARATH8.481e-1592.31Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH1.889e-1489.74Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH2.467e-1489.74Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC9_ARATH4.209e-1487.18SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC30_ARATH1.599e-1387.18Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC12_ARATH2.309e-1279.49Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC29_ARATH3.939e-1281.58Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC4_SCHPO1.497e-1178.95Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_F07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939226 ID=CK939226; Name=CK939226; organism=Citrus sinensis; type=EST; length=394bp
GGGGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGATTGCCC
ACATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGGAGCTAG
ACCCAGAAGTATGCAATGGGTTAGGTCACTGCTATCTCTCTGTCTCAAGG
GAGGGCTTTCCCCAGGGCTTTGGTCTTTAAAACTATTTATGTATGAACAA
GAAGTGTGAGATGTCTCCTCATACAAGTGGTACCAGAGGGGAAGAATTAT
AATTAAGGCCTGGAAACAACAACATTCACTGCTTTTAATTGTTTGTATGC
AAATTTATCTTTTCATGCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
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