CX675635

Overview
NameCX675635
Unique NameCX675635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2594 contig Csv1_Contig2594:17..347. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.654e-32
Identity = 74/95 (77.89%), Postives = 77/95 (81.05%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MARIKVHELRQK+K +               RVAKVTGGAPNKLS IKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLDLRP+KTRAIRRRL
Sbjct:    1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.317e-31
Identity = 73/95 (76.84%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MARIKVHELR+KSK D               RVAKVTGGAPNKLS IKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRP+KTRAIRRRL
Sbjct:    1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.247e-31
Identity = 73/95 (76.84%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MARIKVHELR KSK D               RVAKVTGGAPNKLS IKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLDLRP+KTRAIRRRL
Sbjct:    1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.115e-30
Identity = 72/95 (75.79%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MARIKVHELR+KSK D               RVAKVTGGAPNKLS IKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRP+KTRAIRRRL
Sbjct:    1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.902e-30
Identity = 72/95 (75.79%), Postives = 74/95 (77.89%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MARIKVHELR KSK D               RVAKVTGGAPNKLS IKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLDLRP+KTRAIRRRL
Sbjct:    1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL35_ICTPU (60S ribosomal protein L35 OS=Ictalurus punctatus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 2.753e-21
Identity = 56/95 (58.95%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MA+IK  +LR K K +               RVAKVTGGA +KLS I+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPRKTRAIRR+L
Sbjct:    1 MAKIKARDLRGKKKEELLKHVDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRAIRRQL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL35_XENTR (60S ribosomal protein L35 OS=Xenopus tropicalis GN=rpl35 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.595e-21
Identity = 55/95 (57.89%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MA+IK  +LR K K +               RVAKVTGGA +KLS I+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRA+RRRL
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL35_HIPCM (60S ribosomal protein L35 OS=Hippocampus comes GN=rpl35 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.595e-21
Identity = 55/95 (57.89%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MA+IK  +LR K K +               RVAKVTGGA +KLS I+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRA+RRRL
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKNELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVITQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.695e-21
Identity = 55/95 (57.89%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MA+IK  +LR K K +               RVAKVTGGA +KLS I+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRA+RRRL
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRL 95          
BLAST of CX675635 vs. ExPASy Swiss-Prot
Match: RL35_PIG (60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.695e-21
Identity = 55/95 (57.89%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   46 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSXIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPRKTRAIRRRL 330
            MA+IK  +LR K K +               RVAKVTGGA +KLS I+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRA+RRRL
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRL 95          
The following BLAST results are available for this feature:
BLAST of CX675635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES2.654e-3277.8960S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL352_ARATH1.317e-3176.8460S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL354_ARATH2.247e-3176.8460S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL351_ARATH1.115e-3075.7960S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH1.902e-3075.7960S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_ICTPU2.753e-2158.9560S ribosomal protein L35 OS=Ictalurus punctatus G... [more]
RL35_XENTR3.595e-2157.8960S ribosomal protein L35 OS=Xenopus tropicalis GN... [more]
RL35_HIPCM3.595e-2157.8960S ribosomal protein L35 OS=Hippocampus comes GN=... [more]
RL35_RAT4.695e-2157.8960S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_PIG4.695e-2157.8960S ribosomal protein L35 OS=Sus scrofa GN=RPL35 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63F10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63F10-K19-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675635 ID=CX675635; Name=CX675635; organism=Citrus sinensis; type=EST; length=331bp
GCAGAGGAAGCCGCCGTTGCAGGAGCAGAGACACCAAACGTAGCAATGGC
TAGGATCAAGGTGCATGAGCTGAGGCAGAAATCGAAGGTGGATCTTTTGA
ACCAGTTGAAGGAACTCAAGGCTGAGCTCGCCCTCCTTCGCGTTGCTAAG
GTCACCGGCGGTGCCCCTAACAAGCTATCCNAGATCAAGGTGGTGAGGTT
GTCGATCGCACAAGTGTTGACTGTCATTTCACAAAAGCAGAAGGCTGCAT
TGAGGGAGGCATACAAGAATAAGAAGTTCTTGCCCCTTGATCTGCGTCCC
AGGAAGACCCGGGCTATCAGGAGAAGGCTTA
back to top