CK939220

Overview
NameCK939220
Unique NameCK939220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939220 vs. ExPASy Swiss-Prot
Match: TOM7A_ARATH (Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana GN=TOM7-1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-17
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  152 SEEKSMVDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 310
            S++KS  D  KEW+ W++KKAKVVTHYGFIPL+I +GMNSDPKP ++QLLSPV
Sbjct:   23 SDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75
[Close]
BLAST of CK939220 vs. ExPASy Swiss-Prot
Match: TOM7A_SOLTU (Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.610e-15
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 2 
Query:  182 KEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 310
            KEW TWT KKAKV+THYGFIPL+IIIGMNS+PKP + QLLSPV
Sbjct:   30 KEWGTWTAKKAKVITHYGFIPLVIIIGMNSEPKPSLSQLLSPV 72
[Close]
BLAST of CK939220 vs. ExPASy Swiss-Prot
Match: TOM7B_ARATH (Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana GN=TOM7-2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  152 SEEKSMVDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 310
            S   S    FK+W+ W+++KAKV THYGFIPLIIIIGMNSDPKP ++ LLSPV
Sbjct:   25 SSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77
The following BLAST results are available for this feature:
BLAST of CK939220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TOM7A_ARATH3.771e-1769.81Mitochondrial import receptor subunit TOM7-1 OS=Ar... [more]
TOM7A_SOLTU4.610e-1581.40Mitochondrial import receptor subunit TOM7-1 OS=So... [more]
TOM7B_ARATH7.863e-1566.04Mitochondrial import receptor subunit TOM7-2 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004432_G12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939220 ID=CK939220; Name=CK939220; organism=Citrus sinensis; type=EST; length=555bp
GGGGAATCACGGTTGTCGCTTCTCAGTCGCTAAAGCCTCCTCTCAACACA
ACGTTCAATCCGTTCACCGCAGCAGGTCAAGATTTGAGGAGAAAATGGGT
TCTAGAGTAACACTTGGGACCAAAGGCAAGGGCGTGAAGGGAGCAAAGGC
ATCAGAGGAGAAATCAATGGTCGATTCTTTCAAAGAGTGGAGCACTTGGA
CCATGAAAAAGGCTAAAGTGGTCACTCACTATGGATTTATTCCTCTTATC
ATCATTATCGGCATGAATTCTGATCCCAAGCCCCAAGTCTATCAGCTCCT
CAGCCCCGTTTGATCTCCATACTTGACTCTTCCTTTTCTTTTGATGTCAA
ACAAAATAGTTATTATCATGCTGTGCCTTCCTATTTGTCGAATCTACATG
AATTGAATGTTTTAGGAGTTTTGGTTTCTTGTGATCGTACTTCCTGCCTA
GTTGTAAGCTTATGGATTGACTAGTATAAAATGTCTGGAATTTGAATTAA
AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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