CK939216

Overview
NameCK939216
Unique NameCK939216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.104e-29
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 3
Query:   48 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 248
            MAPKQPNTGLFVGLNKGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRITELLKVG
Sbjct:    1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVG 67          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.236e-21
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 3
Query:   48 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 248
            M   Q  TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +I+EVAG APYEKRITELLKVG
Sbjct:    1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 67          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.615e-21
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:   69 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 248
            TGLFVGLNKGH+VTK+E PPRP +RKGKTSKR  F+R +I+EVAG APYEKRITELLKVG
Sbjct:    4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.109e-21
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 3
Query:   69 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 248
            TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +IREVAG APYEKRITELLKVG
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = 3
Query:   72 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 242
            GL VGLNKG ++TK++LP RP+ RKG+ SKR  FVR+++REVAGFAPYE+R+ EL++
Sbjct:    4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIR 60          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.949e-15
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 3
Query:   72 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 242
            GL VGLNKG  +TK++LP RP+ RKG  SKR  FVR+++REVAGFAPYE+R+ EL++
Sbjct:    4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIR 60          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 3
Query:   81 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 248
            VGLNKGH VTKK   PRP+ RKG  S+RV  VR V+REVAG+APYE+R+ ELLKVG
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVG 61          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.114e-13
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 3
Query:   75 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKV 245
            L VGL KGH VTK E  PRP+ RKG  SK   FVR +IREV GFAP+E+R  ELLKV
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKV 63          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL36_TRIHM (60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   48 MAPKQP-NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 242
            MA + P  TGL VGLNKGH  T + + PR +  KG  SKR  FVR V++EVAG APYE+R+ ELL+
Sbjct:    1 MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLR 66          
BLAST of CK939216 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.800e-12
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 3
Query:   81 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKV 245
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKV 63          
The following BLAST results are available for this feature:
BLAST of CK939216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL36_DAUCA2.104e-2991.0460S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL362_ARATH1.236e-2173.1360S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH1.615e-2180.0060S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH2.109e-2180.0060S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36A_SCHPO4.550e-1663.1660S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36B_SCHPO2.949e-1563.1660S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_ENTCP1.912e-1469.6460S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36_IXOSC2.114e-1364.9160S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36_TRIHM1.370e-1256.0660S ribosomal protein L36 OS=Trichoderma hamatum G... [more]
RL36_XENTR6.800e-1261.8260S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939216 ID=CK939216; Name=CK939216; organism=Citrus sinensis; type=EST; length=303bp
GGGGACTCATCTTAGGTTTCCGCAGCAACTCAGTTTCGTCGGAGGTGATG
GCTCCGAAACAGCCAAATACTGGTCTCTTTGTTGGATTAAACAAGGGTCA
TATTGTGACGAAGAAGGAACTGCCGCCACGCCCAGCAGATCGCAAAGGGA
AAACAAGCAAAAGGGTCCACTTCGTGAGGACTGTGATTAGGGAAGTTGCT
GGCTTTGCACCCTATGAGAAAAGGATCACTGAGCTTCTTAAAGTCGGCAA
GGACAAGAGGGCACTGAAGGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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