CK939214

Overview
NameCK939214
Unique NameCK939214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.157e-23
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  127 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            MARR DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVE ATRTLQV
Sbjct:    1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV 56          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.775e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  127 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVE ATRTLQV
Sbjct:    1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV 56          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.775e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  127 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVE ATRTLQV
Sbjct:    1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV 56          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  127 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVE ATRTLQV
Sbjct:    1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV 56          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 5.040e-21
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  127 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            M  R D+EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVE ATRT QV
Sbjct:    1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQV 56          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  127 MARRADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            M+ + D++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVE ATR++QV
Sbjct:    1 MSHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQV 56          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1
Query:  136 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            RA+++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVE ATR+LQV
Sbjct:    6 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQV 58          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.765e-19
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  136 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            RAD+EYDYLFKVVLIGDSGVGKSNLLSRFT+NEF LESKSTIGVE ATR+L V
Sbjct:    5 RADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNV 57          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.046e-19
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1
Query:  136 RADEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQVTN 300
            RAD+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVE AT++L + N
Sbjct:    5 RADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDN 59          
BLAST of CK939214 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1
Query:  142 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVELATRTLQV 294
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVE ATR++QV
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV 55          
The following BLAST results are available for this feature:
BLAST of CK939214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RAA2A_ARATH3.157e-2396.43Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU7.775e-2289.29Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_LOTJA7.775e-2289.29Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC1.326e-2189.29Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAA2C_ARATH5.040e-2185.71Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE2.117e-1982.14Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RIC2_ORYSJ2.117e-1988.68Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RAA1C_ARATH2.765e-1988.68Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT3_NICPL8.046e-1981.82Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11B_RAT1.051e-1890.20Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_G06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939214 ID=CK939214; Name=CK939214; organism=Citrus sinensis; type=EST; length=595bp
GGGGAAAAGCNNNGAAATCAAACGGTTTCCGACTCTACGCTTTAAATTCA
GCTTCATTTCTTCAACTGAAGAATCGGTCGTCTCTCATTTTTTATTTATT
ATATAAAGATAAATATCTAAATTTAAATGGCGAGAAGAGCGGACGAGGAA
TACGATTACTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAA
ATCGAACTTACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCA
AATCCACTATTGGCGTCGAACTCGCCACCCGCACTCTTCAAGTAACTAAC
TTTTCCTCTTTCACTTCTCTTCATTTTTATTAGTTAATTAAGATCCAGTT
AATGTAATTAATTTTATTTAGTCTTTTAAATAAAGTTCTAGATTAGGCTA
ACTTAGATTCATGTGAAGTTGAAGTGATTTACTTTCGATCTCTTTTTCGT
CCTATGTTTATTTGTACTTACTATTTCTTTTTTTTGGGTTTAAATTTTCG
TTTTTGAAGTGTTTACTGAATAAATTTCTGAGCTTTATTTGTGTATGCTG
ATTGATTTGTGATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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