CK939209

Overview
NameCK939209
Unique NameCK939209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  204 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 89          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  204 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 89          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  204 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 89          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  204 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 89          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.728e-26
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  204 SASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            S+   E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 89          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 3
Query:  225 DYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGII 461
            DY FK+L++GDSGVGKS +L  FTS  FEE  + TIGVDFKVKY+   GK+ KL IWDTAGQERFRTLTSSYYRGAQGII
Sbjct:    7 DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTAGQERFRTLTSSYYRGAQGII 86          

HSP 2 Score: 85.8853 bits (211), Expect = 3.361e-16
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  640 LIQIYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTKKEGINFAREXGCPFIECSAKTRVNVQQCF 882
            +I +YDVTRRDTF +L   W +E D+YST +  IK++V NKVD  ++R V+ +EG +FAR  GC F+E SA+  + V Q F
Sbjct:   85 IIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAF 165          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 3
Query:  219 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ V++ GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 3
Query:  219 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ V++ GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 3
Query:  219 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            E+DYLFKLL+IGDSGVGKS LLL F  D + E    TIGVDFK++ +++ GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 86          
BLAST of CK939209 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 3
Query:  219 EFDYLFKLLMIGDSGVGKSSLLLSFTSDNF-EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIM 464
            E+DYLFKLL+IGDSGVGKS LLL F+ D++ E    TIGVDFK++ V+  GK +KL IWDTAGQERFRT+TSSYYRGA GII+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86          
The following BLAST results are available for this feature:
BLAST of CK939209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 358
Match NameE-valueIdentityDescription
RAB1A_RAT2.728e-2665.91Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG2.728e-2665.91Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE2.728e-2665.91Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN2.728e-2665.91Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA2.728e-2665.91Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
YPTV3_VOLCA6.077e-2673.75GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]
YPTV1_VOLCA6.077e-2669.88GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPTC1_CHLRE6.077e-2669.88GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
YPT1_PHYIN6.077e-2668.67Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RBD2A_ARATH6.077e-2669.88Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004432_H08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939209 ID=CK939209; Name=CK939209; organism=Citrus sinensis; type=EST; length=882bp
GGGACTGCGACGACAACGATCGCGATCTCCATTTTCACCTTTTTCTGTGA
CCACAGTGAACAGATCCTACTTTTGCCTATCGTCTTTGTAATTCATTCAT
CAAATTTCAGTGCTGTTGAGGTGGTGGTGATTTTGGGGTTTGTGGGATTT
GGATTTTGGTGGCAGTTTTTGAGAAAGAGAGTCAAATTTAGATGGATTCA
TCATCAGCAAGTCAGCAAGAATTTGATTACTTGTTCAAGTTGTTGATGAT
TGGAGATTCTGGTGTTGGTAAAAGTAGTCTCCTATTGAGCTTCACTTCTG
ACAACTTTGAAGAGCTTTCGCCCACTATTGGTGTCGATTTTAAGGTGAAA
TATGTTGACGTTGGGGGGAAGAAATTGAAACTTGCAATTTGGGATACAGC
TGGTCAGGAGAGATTTCGGACATTGACTAGTTCATACTACAGGGGTGCAC
AAGGCATCATTATGGGTATTTAATTTCATCTTTTTAGTGTAGTTACTTTG
TTTATTTTTCAAGGAAAATTTCTGGCTAATGCCTCATTGAAGAACATTGT
TTAATGTTGAATTAACCTTTTCCAATGTATAGAGCATCTTGACTCTGTCT
GGGCTTTGTAGTAGCGATTTCATATTTTTCAGAGATTGGCTTATCCAAAT
TTATGATGTTACAAGGCGAGACACATTTACTAATCTTTCTGATGTATGGG
CTAAGGAAATTGACTTATACTCAACAAACCAAGATTGTATCAAATTGCTC
GTTGGAAACAAAGTTGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGA
GGGCATAAACTTTGCGAGGGAATANGGATGCCCTTTTATTGAATGCAGTG
CTAAAACTCGTGTCAACGTACAGCAGTGCTTT
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