CK939197

Overview
NameCK939197
Unique NameCK939197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S2_DICDI (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.292e-59
Identity = 102/141 (72.34%), Postives = 127/141 (90.07%), Query Frame = 1
Query:  133 HFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVE 555
            HF+LL+SRQGK RLTKWYSP+T KE+S+  RE+  ++L R PKLCNF+EW+ YK+++KRYASLYF +C D+EDNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+++AGELQE+SKKTV RLI+ QD+L+E
Sbjct:    4 HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGELQETSKKTVLRLISQQDTLLE 144          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S2_MOUSE (AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.441e-50
Identity = 91/146 (62.33%), Postives = 113/146 (77.40%), Query Frame = 1
Query:  130 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 567
            + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S2_BOVIN (AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.441e-50
Identity = 91/146 (62.33%), Postives = 113/146 (77.40%), Query Frame = 1
Query:  130 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 567
            + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S2_HUMAN (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.583e-49
Identity = 91/154 (59.09%), Postives = 115/154 (74.68%), Query Frame = 1
Query:  130 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 591
            + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E A+   S +  I
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEEAETPRSVLEEI 154          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S1_MOUSE (AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.986e-48
Identity = 89/155 (57.42%), Postives = 117/155 (75.48%), Query Frame = 1
Query:  127 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 591
            M+ F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S1_HUMAN (AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.986e-48
Identity = 89/155 (57.42%), Postives = 117/155 (75.48%), Query Frame = 1
Query:  127 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 591
            M+ F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S1_SCHPO (AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe GN=SPAP27G11.06c PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.900e-48
Identity = 88/149 (59.06%), Postives = 120/149 (80.54%), Query Frame = 1
Query:  130 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQAS 576
            I F LL+SRQGKVRL KW++  + KER+K+IR++S +++TR PK+CNFVE++G K+VY+RYASL+F   ++Q+DNEL ILE+IH +VE LD+YFG+VCELDLIFNF KAYY+++E+L+AGELQESSK  V   + A D+  E   +Q S
Sbjct:    3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQESSKTNVLSAVLAGDAESEADAQQDS 151          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S3_MOUSE (AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.093e-48
Identity = 85/147 (57.82%), Postives = 113/147 (76.87%), Query Frame = 1
Query:  127 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 567
            MIHF+LL SRQGK+RL KWY+    KER K+ R++   +L+RG +  +F++W+  K+VYKRYASLYFC  ++ +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I GE+QE+SKKT  + I   D L ET +E
Sbjct:    1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSDMLQETMEE 147          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S1_BOVIN (AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.135e-47
Identity = 88/154 (57.14%), Postives = 116/154 (75.32%), Query Frame = 1
Query:  130 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 591
            + F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 154          
BLAST of CK939197 vs. ExPASy Swiss-Prot
Match: AP1S3_HUMAN (AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.354e-47
Identity = 85/145 (58.62%), Postives = 110/145 (75.86%), Query Frame = 1
Query:  127 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETA 561
            MIHF+LL SRQGK+RL KWY     KER K+ RE+  +IL+RG +  +FV+W+  K+VYKRYASLYFC  ++ +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I GE+QE+SKK   + I   D L E +
Sbjct:    1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIEDSDMLQEVS 145          
The following BLAST results are available for this feature:
BLAST of CK939197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP1S2_DICDI1.292e-5972.34AP-1 complex subunit sigma-2 OS=Dictyostelium disc... [more]
AP1S2_MOUSE5.441e-5062.33AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap... [more]
AP1S2_BOVIN5.441e-5062.33AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S... [more]
AP1S2_HUMAN1.583e-4959.09AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
AP1S1_MOUSE2.986e-4857.42AP-1 complex subunit sigma-1A OS=Mus musculus GN=A... [more]
AP1S1_HUMAN2.986e-4857.42AP-1 complex subunit sigma-1A OS=Homo sapiens GN=A... [more]
AP1S1_SCHPO3.900e-4859.06AP-1 complex subunit sigma-1 OS=Schizosaccharomyce... [more]
AP1S3_MOUSE5.093e-4857.82AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap... [more]
AP1S1_BOVIN1.135e-4757.14AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1... [more]
AP1S3_HUMAN7.354e-4758.62AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_A04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939197 ID=CK939197; Name=CK939197; organism=Citrus sinensis; type=EST; length=613bp
GGGGGTCTTATTGGAGAATAATAATAATATTGAAGAGGAGAAGACAATAC
AGACAGCGGAAGTGGAGCAGAGAAGAATTGCATAACATATTAAAGCTGAC
GGGTATTTCATCATCAAACACAAACAATGATTCACTTTGTGCTTCTTATT
AGTCGACAAGGAAAAGTAAGGTTGACAAAATGGTATTCTCCTTATACACA
GAAGGAAAGAAGTAAGGTTATTCGTGAGCTAAGTGGTGTGATTCTTACAA
GAGGACCTAAGCTCTGTAATTTTGTGGAATGGAGAGGGTACAAGGTTGTC
TATAAAAGATATGCTAGTCTATACTTCTGCATGTGCGTTGATCAGGAAGA
CAATGAGTTAGAGATCCTTGAAATAATTCATCATTATGTTGAGATTCTTG
ACAGATACTTTGGCAGTGTTTGTGAGTTGGACCTCATCTTCAACTTTCAC
AAGGCTTATTACATATTGGATGAGATCTTGATTGCTGGCGAACTTCAAGA
GTCCAGCAAGAAAACAGTCGCACGGCTAATAGCTGCACAGGATTCACTGG
TGGAGACTGCAAAAGAGCAAGCTAGTTCAATAAGTAATATAATCGCACAG
GGCCACAAAGTAG
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