CK939187

Overview
NameCK939187
Unique NameCK939187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.461e-22
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 2
Query:   62 MSDTCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            MSDTCGNCDC D++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTC
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTC 63          
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.672e-18
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   62 MSDTCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            MSD CGNCDC D SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.724e-18
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   71 TCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C C
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKC 63          
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.044e-16
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 2
Query:   62 MSDTCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            MS  C NCDC D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.260e-15
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 2
Query:   62 MSDTCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            MS  C NCDC D +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTC
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTC 64          
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.586e-15
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 2
Query:   62 MSDTCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            MSD CGNCDC D+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKC 60          
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.586e-15
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 2
Query:   62 MSDTCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            MSD CGNCDC D+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKC 60          
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.371e-12
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 2
Query:   62 MSDTCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            MSD CGNCDC D+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNC 63          
BLAST of CK939187 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.209e-12
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 2
Query:   62 MSDTCGNCDCPDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 256
            MSD CG+CDC D+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C C
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNC 63          
The following BLAST results are available for this feature:
BLAST of CK939187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.461e-2267.69Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE1.672e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC3.724e-1861.29Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV2.044e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.260e-1556.92Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ8.586e-1552.31Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI8.586e-1552.31Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.371e-1247.69Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI5.209e-1246.15Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004433_B08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939187 ID=CK939187; Name=CK939187; organism=Citrus sinensis; type=EST; length=360bp
TTCGTACAATAAAGAGCCCTCTATTTCCTGTTTTAAGTTCTAAGGTCTAA
GCTCCATCAACATGTCGGACACCTGCGGCAACTGCGACTGCCCTGACAGG
AGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGAC
TGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGCTG
AGGCTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGC
ACTTGTGNNNGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAAGC
TGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAATAATGTAAGGGTGATT
AAAAAAAAAA
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