CK939182

Overview
NameCK939182
Unique NameCK939182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.102e-106
Identity = 182/205 (88.78%), Postives = 195/205 (95.12%), Query Frame = 1
Query:    4 SLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+FL+ENKLL
Sbjct:   52 SPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLL 256          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.455e-106
Identity = 181/205 (88.29%), Postives = 195/205 (95.12%), Query Frame = 1
Query:    4 SLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+FL+ENKLL
Sbjct:   30 SHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLL 234          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.455e-106
Identity = 181/205 (88.29%), Postives = 195/205 (95.12%), Query Frame = 1
Query:    4 SLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+FL+ENKLL
Sbjct:   66 SHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLL 270          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 2.715e-105
Identity = 179/199 (89.95%), Postives = 193/199 (96.98%), Query Frame = 1
Query:   22 GLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            GL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+F++ENKLL
Sbjct:   68 GLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLL 266          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 6.048e-105
Identity = 178/199 (89.45%), Postives = 193/199 (96.98%), Query Frame = 1
Query:   22 GLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            GL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRT+EDI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+F++ENKLL
Sbjct:   68 GLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLL 266          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 3.920e-104
Identity = 178/205 (86.83%), Postives = 195/205 (95.12%), Query Frame = 1
Query:    4 SLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            S    LGL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYAS +RLLILKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT++DI+LANSVD+ +LRDPQ+D+ RVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAP+NLEVP Y+FL+ENKLL
Sbjct:   59 SPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLL 263          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 4.334e-103
Identity = 177/202 (87.62%), Postives = 194/202 (96.04%), Query Frame = 1
Query:   13 RDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            +D GL +DLPATVAAVKNP  K+VYDE+NHERYPPGD SKRAFAYF+L+GGRF+YASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI+LANSVDVASLR P++D+ RVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVP Y+FL+ENKLL
Sbjct:   71 QDAGL-ADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPTYSFLEENKLL 271          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.157e-55
Identity = 100/169 (59.17%), Postives = 131/169 (77.51%), Query Frame = 1
Query:  112 PPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            PP  ++   F+YF++     + A+  +  I +F+ +MSAS DVLA+A +EVDL++I  G  V +KWRGKPVFIR RT  +I+ AN V+VA+LRDP+ D+ RVK PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIRKGPAP NLE+P+Y F +E KL+
Sbjct:   63 PP--STNMLFSYFMVGTMGAITAAGAKSTIQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRKGPAPLNLEIPLYEFPEEGKLV 229          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.859e-54
Identity = 102/195 (52.31%), Postives = 142/195 (72.82%), Query Frame = 1
Query:   37 LPATVAAVKNPTSKIVYDEHNHERYPPGDASK-RAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNFLDENKLL 618
            L A+ +  + P    V  E+N       DA K R++AYF++     + ++  +  +  F+ SM+A+ DVLA+A +EV+L++I  G  V VKW+GKPVFIR RT  +IQ ANSVD+++L+DPQ D+ RVK+P+WL+++G+CTHLGC+P+  AGDFGGWFCPCHGSHYDISGRIRKGPAP NLE+P Y F D +K++
Sbjct:   27 LLASKSTYRTPNFDDVLKENN-------DADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEF-DGDKVI 213          
BLAST of CK939182 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.482e-52
Identity = 97/170 (57.06%), Postives = 123/170 (72.35%), Query Frame = 1
Query:   88 DEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPMYNF 597
            D   ++    GD S R  +Y ++     + A+  +  +  F+ S SAS DVLA++  EVDLS I  G  + VKW+GKPVFIR RT E+IQ ANSVD+++LRDPQ DS RV+ PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDISGRIR+GPAP NL +P Y F
Sbjct:   52 DFSEYQTKSTGDRS-RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTF 220          
The following BLAST results are available for this feature:
BLAST of CK939182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI1_TOBAC1.102e-10688.78Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI4_TOBAC2.455e-10688.29Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI2_TOBAC2.455e-10688.29Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI3_TOBAC2.715e-10589.95Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI5_TOBAC6.048e-10589.45Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI_SOLTU3.920e-10486.83Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MAIZE4.334e-10387.62Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR1.157e-5559.17Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST4.859e-5452.31Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO3.482e-5257.06Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_A11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939182 ID=CK939182; Name=CK939182; organism=Citrus sinensis; type=EST; length=620bp
GGGAGTCTAGGACGTGATTTGGGTCTGATCTCAGACCTTCCAGCTACTGT
GGCAGCTGTGAAGAACCCAACTTCAAAAATTGTCTATGATGAGCACAATC
ATGAGCGTTATCCACCTGGTGACGCCAGCAAGCGTGCATTTGCTTATTTT
ATCTTGACAGGTGGCAGGTTTGTGTATGCCTCCTTAATTCGTCTTTTGAT
CCTCAAGTTTGTTCTTAGCATGTCTGCGAGCAAAGATGTCCTTGCCCTTG
CCTCCCTTGAGGTTGACCTATCCAGCATTGAACCCGGGACTACTGTTACA
GTCAAGTGGCGTGGGAAGCCAGTTTTCATCAGGCGTCGGACTGAAGAGGA
TATTCAGTTGGCTAACAGTGTTGATGTAGCGTCACTCCGGGACCCACAGG
AAGATTCTGTCAGGGTTAAGAATCCAGAATGGCTTGTCGTTGTTGGTGTG
TGCACACATTTGGGGTGCATTCCTTTACCAAATGCTGGTGACTTTGGAGG
TTGGTTCTGCCCCTGCCATGGTTCGCACTATGACATATCTGGCAGGATCC
GCAAGGGGCCAGCACCATTCAATCTAGAGGTACCCATGTACAATTTCTTG
GACGAGAACAAGTTACTGGA
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