CX675622

Overview
NameCX675622
Unique NameCX675622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5513 contig Csv1_Contig5513:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: IPT9_ARATH (tRNA isopentenyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.662e-65
Identity = 123/166 (74.10%), Postives = 139/166 (83.73%), Query Frame = 3
Query:  153 TSCSVA-------SSKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGD 629
            T+CSV         S+KEKVIVISGPTGAGKSRLA+ELAKRLNGEIISADSVQVY+GLD+GSAKPS SDRK VPHHLIDILHP +DYSVG+F++D R ATKD+L +GRVPIVTGGTGLYLRWF+YGKPDVPK SPE+IAE +  L   Q + +W AAVE VV AGD
Sbjct:   33 TACSVPLNGNKKKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEIISADSVQVYKGLDVGSAKPSDSDRKVVPHHLIDILHPSQDYSVGQFYDDGRQATKDILNRGRVPIVTGGTGLYLRWFMYGKPDVPKPSPEVIAEAHDMLVGFQTEYNWDAAVELVVNAGD 198          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA_XYLFA (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Xylella fastidiosa GN=miaA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.861e-33
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 3
Query:  192 IVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSE 563
            IV+ GPT +GKS+LA+++AKR  GE+IS DSV VYRGLDIG+AKP+++ R  VPHHLIDI  P E YS   F  DAR A   ++++G +PI+TGGTGLY R  + G  D+P A PEI A + +E
Sbjct:   10 IVLMGPTASGKSQLAIDIAKRWGGEVISVDSVLVYRGLDIGTAKPNAAMRASVPHHLIDICEPWETYSAADFAHDARAAIDMIVRRGALPILTGGTGLYFRALLAGLSDMPPAHPEIRAMITAE 133          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA_XYLFT (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=miaA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.879e-33
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 3
Query:  192 IVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSE 563
            IV+ GPT +GKS+LA+++AKR  GE+IS DSV VYRGLDIG+AKP+++ R  VPHHLIDI  P E YS   F  DAR A   ++++G +PI+TGGTGLY R  + G  D+P A PEI A + +E
Sbjct:   10 IVLMGPTASGKSQLAIDIAKRWGGEVISVDSVLVYRGLDIGTAKPNAAMRASVPHHLIDICEPWETYSAADFAHDARAAIDMIVRRGALPILTGGTGLYFRALLAGLSDMPPAHPEIRAMIAAE 133          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA_XYLFM (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Xylella fastidiosa (strain M12) GN=miaA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.879e-33
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 3
Query:  192 IVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSE 563
            IV+ GPT +GKS+LA+++AKR  GE+IS DSV VYRGLDIG+AKP+++ R  VPHHLIDI  P E YS   F  DAR A   ++++G +PI+TGGTGLY R  + G  D+P A PEI A + +E
Sbjct:   10 IVLMGPTASGKSQLAIDIAKRWGGEVISVDSVLVYRGLDIGTAKPNAAMRASVPHHLIDICEPWETYSAADFAHDARAAIDMIVRRGALPILTGGTGLYFRALLAGLSDMPPAHPEIRAMIAAE 133          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA_XYLF2 (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Xylella fastidiosa (strain M23) GN=miaA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.879e-33
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 3
Query:  192 IVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSE 563
            IV+ GPT +GKS+LA+++AKR  GE+IS DSV VYRGLDIG+AKP+++ R  VPHHLIDI  P E YS   F  DAR A   ++++G +PI+TGGTGLY R  + G  D+P A PEI A + +E
Sbjct:   10 IVLMGPTASGKSQLAIDIAKRWGGEVISVDSVLVYRGLDIGTAKPNAAMRASVPHHLIDICEPWETYSAADFAHDARAAIDMIVRRGALPILTGGTGLYFRALLAGLSDMPPAHPEIRAMIAAE 133          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA1_GEOBB (tRNA Delta(2)-isopentenylpyrophosphate transferase 1 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=miaA1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 3
Query:  177 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEI 542
            KK KVIV+ GPTG+GKS LA++LA+ + GEI++ADS+QVYR LDIG+AKPS++D   VPHHLIDIL P ED++   F  +A  A  D+ ++G+  IV GGTGLY+R  +YG  D P   PE+
Sbjct:    6 KKIKVIVLGGPTGSGKSDLAVKLAEEIGGEIVNADSMQVYRRLDIGTAKPSAADLARVPHHLIDILDPNEDFTASDFRREATAAIADIERRGKRAIVVGGTGLYIRALLYGLVDSPTGDPEL 127          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA_METCA (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Methylococcus capsulatus GN=miaA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.497e-31
Identity = 65/145 (44.83%), Postives = 100/145 (68.97%), Query Frame = 3
Query:  165 VASSKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYA 599
            +++++   V+V+ GPT +GKS+LA+ELA  L+GEI+S DS  VYRG+DIG+AKP+ ++R  VPHHLID+L P E +S G+F ++A     D+  +GR+P++ GGT LY    + G  ++P A P++  E+ +  A   RDG W+A
Sbjct:    1 MSAAELPPVVVLMGPTASGKSQLAIELANALDGEIVSVDSSLVYRGMDIGTAKPTPTERAAVPHHLIDVLDPSEVFSTGRFRDEALALIADITARGRLPVLAGGTMLYFNALLRGLAELPSADPDLRREIETRAA---RDG-WHA 141          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA_PARUW (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Protochlamydia amoebophila (strain UWE25) GN=miaA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.965e-31
Identity = 66/132 (50.00%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  180 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADL 575
            K+++IVI+GPT  GKS LAL LA+ ++GEIISADS+QVYRG+DIG+AK +  +R  VPHHLIDI    E ++V  F+ +AR A + +L +G VPI+ GG+G YL   +YG P  P + PE+      E+  L
Sbjct:   35 KKRIIVIAGPTCCGKSALALNLAQTMDGEIISADSMQVYRGMDIGTAKATKEERLFVPHHLIDIRDIQESFNVVDFYYEARQACQKILDQGNVPIIAGGSGFYLHALLYGPPSGPPSVPEVRKSFEDEIERL 166          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA_HALHL (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=miaA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.267e-30
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = 3
Query:  189 VIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 569
            V+ I GPT  GKS LAL LA+RL GEI+S DS Q+YRGLDIG+AKPS + R   PHHLIDI  P E YS  +F  DA+ A   +  +GR+P++ GGTGLY +   +G   +P A  ++ AE+ +E A
Sbjct:    5 VLCIMGPTAVGKSELALSLAERLGGEIVSVDSAQIYRGLDIGTAKPSPAVRARCPHHLIDIRDPAERYSAAEFARDAQAAIAAIRSRGRLPVLVGGTGLYFQALQHGLSPMPAADAQVRAELEAEEA 131          
BLAST of CX675622 vs. ExPASy Swiss-Prot
Match: MIAA_DEIGD (tRNA Delta(2)-isopentenylpyrophosphate transferase OS=Deinococcus geothermalis (strain DSM 11300) GN=miaA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.049e-30
Identity = 63/127 (49.61%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  189 VIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSSSDRKEVPHHLIDILHPCEDYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 569
            V +++ PT AGKS LAL L ++   E+I+AD+  VYRGLDIG+AKP+ ++R +VPHHL+D++   EDY V ++   A  A  DVL +GRVP+V GGTG YL   + G P  P A P++ AEV ++LA
Sbjct:    4 VPLLTAPTAAGKSALALALGRQFGLEVIAADAFTVYRGLDIGTAKPTPAERAQVPHHLLDVVDVTEDYDVARYTRAAESAIADVLARGRVPLVVGGTGFYLSALVRGLPLTPPADPQMRAEVEADLA 130          
The following BLAST results are available for this feature:
BLAST of CX675622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IPT9_ARATH1.662e-6574.10tRNA isopentenyltransferase 9 OS=Arabidopsis thali... [more]
MIAA_XYLFA2.861e-3355.65tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]
MIAA_XYLFT4.879e-3355.65tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]
MIAA_XYLFM4.879e-3355.65tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]
MIAA_XYLF24.879e-3355.65tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]
MIAA1_GEOBB6.373e-3355.74tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]
MIAA_METCA3.497e-3144.83tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]
MIAA_PARUW5.965e-3150.00tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]
MIAA_HALHL2.267e-3051.18tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]
MIAA_DEIGD5.049e-3049.61tRNA Delta(2)-isopentenylpyrophosphate transferase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63E10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63E10-I19-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675622 ID=CX675622; Name=CX675622; organism=Citrus sinensis; type=EST; length=630bp
TTTCTCTCACTCATAAAAATTAAGATTTAAAAAAAGAAGGAAAAAGGAAA
GAAATGTTAATGAGCGGAGTGTGTGGTGGGGGCGGCATCCGTGCATGGCT
GAAAGAGAAGCCCTTACTCCGGCAATTCGCTCGGCGCCGGCGTCTATTCG
CCACGTCATGTTCCGTTGCTTCAAGCAAGAAAGAGAAGGTTATTGTGATA
TCTGGGCCCACCGGAGCCGGCAAGAGCCGGCTGGCTTTGGAGCTCGCTAA
GCGCCTCAATGGTGAAATCATCAGCGCCGACTCTGTCCAGGTTTATCGAG
GTCTTGATATTGGGTCTGCAAAGCCTTCTTCTAGTGATCGAAAGGAAGTG
CCTCATCATCTAATTGACATACTGCATCCATGTGAAGACTATTCTGTCGG
AAAATTTTTTGAGGATGCGAGGCATGCGACAAAAGATGTTCTTAAAAAGG
GCCGTGTTCCGATTGTTACGGGTGGGACTGGATTGTATTTGCGATGGTTC
ATATATGGAAAGCCAGATGTTCCAAAAGCGTCCCCAGAGATTATCGCTGA
AGTAAATTCTGAGCTTGCAGATCTACAGAGAGATGGAGACTGGTATGCTG
CTGTGGAGTTTGTGGTTAAAGCAGGTGATC
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