CX675621

Overview
NameCX675621
Unique NameCX675621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6356 contig Csv1_Contig6356:351..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675621 vs. ExPASy Swiss-Prot
Match: IPT9_ARATH (tRNA isopentenyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.452e-13
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = -2 
Query:  461 RNFAKRQLTWFRNESIYHWLNAARPLENVLNYIITAYPDSTGTLVVPDYLQXXXXXXXXXXXXXXXSYRTRNR 679
            RNFAKRQ+TWFR E +YHWLNA++PL+++L  I  AY      + +P+ L+                YR++NR
Sbjct:  359 RNFAKRQMTWFRCEPMYHWLNASKPLDSILQCIYDAYESEAEMVEIPESLRMSKDVRDSREASELKGYRSKNR 431

HSP 2 Score: 30.0314 bits (66), Expect = 1.452e-13
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = -1 
Query:  339 RHFVSRGDCCNILDWIK 389
            RHFV R DC ++L+WI+
Sbjct:  431 RHFVRREDCSSVLEWIR 447
The following BLAST results are available for this feature:
BLAST of CX675621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IPT9_ARATH1.452e-1341.10tRNA isopentenyltransferase 9 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63E10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63E10-I19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675621 ID=CX675621; Name=CX675621; organism=Citrus sinensis; type=EST; length=680bp
TTTTGTACTCAAAATGATTATTTAATAAGCAAAACAAAAATAGCAAATCT
GTTTGTGCACCAAAACACCTTTACATATTCAAGTTACCTGACCTTCCTAG
AGCAATCAATATGGTATAATTTTCCTGTCTCTCACTTTTTGCAGATCAGG
TGAGCAATTATGGGTATTTATATTCCAATTTAATTCGATATGAAGAATTG
CATTGGATTGGAAGTTTTGGAATCCACAATCGGCAGATCAATTTGTTCAC
CACAGGGTACAATGCAGCTCCGTGCTCTGAACATAAATGCTCAAACTACG
ATTGGTTCACGGAGTTCACAAGTTTCGCCTTGAGTTCTCTTTATCCAGTC
TAGAATATTACAGCAATCTCCACGGCTAACAAAATGCCTTCAATTTCAGA
AAAGTAAAAATAATTAGCAGATAATGAATAATAGAATGATTAACTTCTTA
ATAACTTGTACCTGTTTCTGGTGCGGTACGACTTAAGTTCAGAGACTTCA
CGACTGCTTGATGAATCTCTTCTTAATTGAAGATAATCAGGCACAACCAA
AGTTCCTGTTGAATCAGGATATGCAGTAATGATGTAATTGAGCACATTTT
CCAGCGGTCTAGCAGCATTAAGCCAGTGATATATACTTTCATTACGGAAC
CATGTCAGTTGCCTTTTGGCAAAGTTTCTT
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