CK939156

Overview
NameCK939156
Unique NameCK939156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939156 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.533e-21
Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:  358 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQVRIASMSYDVNDTDCRAL-SRGLTGESLKKLPCHVILDEI 627
            E+LEASRAYW LE +GSRG SSMADFVE L RGR ++EQ    ++ ++HWQ+RI+ +SY+  +     L +RGL+G+SL+KLPC+++  E+
Sbjct:   78 EVLEASRAYWYLELSGSRGPSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEEREDVYGELEARGLSGDSLRKLPCYIMSSEM 168
The following BLAST results are available for this feature:
BLAST of CK939156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATL1Q_ARATH1.533e-2152.75RING-H2 finger protein ATL1Q OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004433_E05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939156 ID=CK939156; Name=CK939156; organism=Citrus sinensis; type=EST; length=641bp
GCGGGGAATGAAANNTAAATAAATAAAGAGCCACCGAGATATTTTCGAAA
TCCATCTCTTTTTGCACGTGATCCCTCACTCCTTCAGTAACCAATATACG
CCGGCTTCTCGCACTTGCGGTGGCTCCGCTTCAGCTCCGCCGCCAGCATG
GATGATTTAGAATTCGAAGACCCCAACCTTTTCCAATCTATTCCCAAATT
CATCGCTGGCGCCATTTCTGGCACCCTCACTGGTCTCTTCGCTCTGGCTG
GAGCTTTCACAGGGGCAATTACGGGTGCTTTAGCTGGCAGGGCTTCTGAC
TGTGGTGTTCTGCGAGGGGCTGGACTGGGTGCAATTGCCGGGGCTGTACT
CTCTGTTGAGCTTTTGGAGGCTTCTCGTGCTTACTGGTGTTTGGAACGAA
CTGGTTCTCGGGGCTCCTCGTCTATGGCAGACTTTGTTGAGGATCTTCTC
CGCGGGAGATTCATAGAGGAACAGTTTACTCCAGCCATATTAGGTGCTTA
CCACTGGCAGGTAAGAATTGCTAGTATGAGTTACGATGTGAACGATACCG
ACTGTAGAGCTCTATCCAGAGGATTGACAGGAGAGTCACTGAAAAAATTA
CCTTGTCACGTGATCTTGGATGAAATCAAGCCAACACAGAG
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