CK939155

Overview
NameCK939155
Unique NameCK939155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_EUPES (60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.803e-42
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 289
            LAL+  AKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK ALREAYKNKKFLPLD RPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYAIKV
Sbjct:   28 LALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL354_ARATH (60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 289
            LAL+  AKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLD RPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   28 LALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL352_ARATH (60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 289
            LAL+  AKVTGGAPNKLSKIKVVR SIAQVLTVISQKQK+ALREAYKNKK LPLD RPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   28 LALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL351_ARATH (60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.538e-40
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 289
            LAL+  AKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLD RPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYAIKV
Sbjct:   28 LALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL353_ARATH (60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.701e-39
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 289
            LA +  AKVTGGAPNKLSKIKVVR SIAQVLTV SQKQK+ALREAYKNKK LPLD RPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYAIKV
Sbjct:   28 LASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_RAT (60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.493e-27
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 286
            L+ +  AKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLD RPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:   28 LSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_MOUSE (60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.493e-27
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 286
            L+ +  AKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLD RPKKTRA+RRRLTKH+  LKT++++++E  +P+RKYA+K
Sbjct:   28 LSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYAVK 122          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_HUMAN (60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 286
            L+ +  AKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLD RPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:   28 LSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_CHICK (60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 286
            L+ +  AKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLD RPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYAIK
Sbjct:   28 LSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYAIK 122          
BLAST of CK939155 vs. ExPASy Swiss-Prot
Match: RL35_BOVIN (60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 LALIPEAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDQRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 286
            L+ +  AKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLD RPKKTRA+RRRL KH+ +LKT++++++E  +P+RKYA+K
Sbjct:   28 LSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122          
The following BLAST results are available for this feature:
BLAST of CK939155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_EUPES2.803e-4292.7160S ribosomal protein L35 OS=Euphorbia esula GN=RP... [more]
RL354_ARATH3.100e-4190.6360S ribosomal protein L35-4 OS=Arabidopsis thalian... [more]
RL352_ARATH3.100e-4190.6360S ribosomal protein L35-2 OS=Arabidopsis thalian... [more]
RL351_ARATH1.538e-4089.5860S ribosomal protein L35-1 OS=Arabidopsis thalian... [more]
RL353_ARATH1.701e-3987.5060S ribosomal protein L35-3 OS=Arabidopsis thalian... [more]
RL35_RAT1.493e-2763.1660S ribosomal protein L35 OS=Rattus norvegicus GN=... [more]
RL35_MOUSE1.493e-2763.1660S ribosomal protein L35 OS=Mus musculus GN=Rpl35... [more]
RL35_HUMAN4.345e-2762.1160S ribosomal protein L35 OS=Homo sapiens GN=RPL35... [more]
RL35_CHICK4.345e-2763.1660S ribosomal protein L35 OS=Gallus gallus GN=RPL3... [more]
RL35_BOVIN4.345e-2762.1160S ribosomal protein L35 OS=Bos taurus GN=RPL35 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_E04 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939155 ID=CK939155; Name=CK939155; organism=Citrus sinensis; type=EST; length=511bp
GCTCGCCCTCATTCCGGAAGCTAAGGTCACCGGCGGTGCCCCTAACAAGC
TATCCAAGATCAAGGTGGTGAGGTTGTCGATCGCACAAGTGTTGACTGTC
ATTTCACAAAAGCAGAAGGCTGCATTGAGGGAGGCATACAAGAATAAGAA
GTTCTTGCCCCTTGATCAGCGTCCCAAGAAGACCCGGGCTATCAGGAGAA
GGCTTACCAAGCACCAGGCTTCACTGAAGACCGAGCGGGAGAAGAAGAGG
GAGATGTACTTTCCCATGAGGAAGTACGCTATTAAGGTGTAGGCTAGAAT
CTTTTTCTAGGAGTATCTTGGTATCTTGCAGTGACGAACCTATTTTGTTG
ACAAATTTTTACTTTGTTACCTTTTCAAATATCATTTTTGTTCAATCTTA
TGTGTGTAAAACTTGAAGGGTGCATCTCAACCTANACAAGATGTGCTAGA
TTGTGATGGAATAGCAGTCAAGATAGGATTCCAAAAAAAAAAAAAAAAAN
NNAAANNAAAA
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