CK939154

Overview
NameCK939154
Unique NameCK939154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.554e-32
Identity = 71/134 (52.99%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  100 EPVNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRD 501
            E  N+NE++ +    LPKM YD+YA GAED+ TL EN  AF RI FR RIL+DV+ ID++TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  T M LS                 RF+QLYV+K R+
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRN 135          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.268e-31
Identity = 68/134 (50.75%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  100 EPVNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRD 501
            E  N+ E+  +    LPKM YD+YA GAED+ TL+EN  AF RI FR RIL+DVS+ID++TT+L +KIS PI++APTA+ K+A+P+GE ATARAA++  T M LS                 RF+QLYV+K R+
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRN 135          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  100 EPVNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLSFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            E  N+ E+  +    LPKM YD+YA GAED+ TL+EN  AF RI FR RIL+DV++ID++TT+L +KIS PI++APTA  K+A+P+GE ATARAA++  T M LS                 RF+QLYV+K R
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNR 134          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  112 LNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXL-SFTXXXXXXXXXXXXXXXRFYQLYVFKKRD 501
            +N++++     LPK  YD+Y  GA DE TL +N+ AF R     R+L +V+  DLST++L  ++S PI +  TA+ ++A+ +GE+AT RA  S  T M L S+                R+ QLY++K R+
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDRE 138          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  106 VNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXL-SFTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            V+++E  E     LPKM YD+YA G+ D+ TL EN  AF RI    R LVDVS+++  T I    IS PI+IAP A+ ++A+  GE+ T  A+   NT M L S +                ++QLYVFK R
Sbjct:   32 VSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLYVFKDR 163          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 55/132 (41.67%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  106 VNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLS-FTXXXXXXXXXXXXXXXRFYQLYVFKKR 498
            V L +F+E     L K  +DF  GGA+D  T  EN+ AF +I  R R L DVS++D+ TTI   +ISAPI IAPT  H+LA P+GE++TARAA + +     S +                R++QLYV   R
Sbjct:    4 VCLTDFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNR 135          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   97 AEPVNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAA 384
            ++ +NL++F+ +    LP     +Y   A+DE TL+EN  A+HRI F  +IL+DV  +D+ST     K SAP  I+ TAL KL +PEGEVA A+ A
Sbjct:  185 SQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGA 280          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 46/133 (34.59%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  106 VNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXL-SFTXXXXXXXXXXXXXXXRFYQLYVFKKRD 501
            V ++++++     L K  YD+Y  GA D+ TL +N++AF R     R+L +V+ IDLST++L  ++S PI +  TA+  +A+ +GE+AT RA  +  T M L S+                R+ QLY++K R+
Sbjct:    6 VCISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDRE 138          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.352e-16
Identity = 54/128 (42.19%), Postives = 66/128 (51.56%), Query Frame = 1
Query:  106 VNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXLS-FTXXXXXXXXXXXXXXXRFYQLYV 486
            V L +FQ      L K   DF  GGA+D  T  +N+ AF RI  R R L DVS +D  TTI   +ISAPI IAPT  H L  P+GE++TARAA +       S F                R++QLYV
Sbjct:    4 VCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYV 131          
BLAST of CK939154 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.377e-16
Identity = 51/128 (39.84%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  106 VNLNEFQELGGLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTRMXL-SFTXXXXXXXXXXXXXXXRFYQLYV 486
            V L +F+      L K  +DF  G A+D  T  EN+ AF RI  R R L D+S++D  TTI   +ISAPI I+PTA H +A P+GE +TARAA   N    + S+                R++QLY+
Sbjct:    4 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYM 131          
The following BLAST results are available for this feature:
BLAST of CK939154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GOX_SPIOL2.554e-3252.99Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH1.268e-3150.75Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH4.817e-3150.38Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN1.231e-1836.64Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX_DICDI1.607e-1840.91Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_BOVIN6.108e-1841.67Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
CYB2_HANAN5.171e-1744.79Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
HAOX1_MOUSE2.566e-1634.59Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_HUMAN3.352e-1642.19Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_RAT4.377e-1639.84Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004433_E03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939154 ID=CK939154; Name=CK939154; organism=Citrus sinensis; type=EST; length=503bp
CTTGACTTTGACTCTGCCCCCGACTCACTGTTGTAATCTGCCTCACGATC
GACCTTCATCGGTTGAAATTTTTAGTCATTCGGGTTCCAAATGGCGGCTG
AACCTGTTAATTTGAATGAGTTCCAAGAATTGGGGGGGCTGGCCCTTCCA
AAAATGTATTATGATTTCTACGCTGGTGGAGCAGAAGATGAACATACCCT
AAAAGAGAATGTGGAAGCCTTTCATAGAATTACGTTTCGGTCGAGAATTC
TTGTCGATGTCAGCAGAATTGATTTATCGACTACCATACTTGATTACAAA
ATCTCGGCTCCCATTATCATTGCTCCGACGGCTTTGCATAAGCTTGCAAA
CCCTGAAGGAGAGGTAGCCACAGCCAGAGCAGCAGCTTCATGTAACACCA
GAATGNTTTTATCCTTCACATCTAGCAGCTCCATAGAGGAGGTTGCGGCC
AGCTCCAATGCTGTTCGCTTCTATCAATTATATGTATTCAAGAAACGAGA
TAT
back to top