CK939150

Overview
NameCK939150
Unique NameCK939150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939150 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 1 
Query:   58 MLEKPWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 420
            +L+K WDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK939150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN8.923e-2852.89Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004433_F10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939150 ID=CK939150; Name=CK939150; organism=Citrus sinensis; type=EST; length=771bp
GGGACTGAAGAAGNNNTTAAAGATTTAGAAACTAGCAGCTAAATTGTAAA
TTTAAAGATGCTAGAGAAGCCTTGGGACGATGTTGTGGCAGGGCCTCAGC
CTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCA
GTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTC
TCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGA
CGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCAC
CCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAA
GCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGG
AGACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGT
AAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTG
TAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTG
TTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAA
ATGCTGCTGACTAAAAGTAAACTAAAGACTGTGATGTTTTTATATCATAT
AATTTAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGAGAT
GAAAGGTTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATTTTN
NNNGAGCCAAGATCATCCCTT
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