CK939147 | Citrus Genome Database

Overview


Name	CK939147
Unique Name	CK939147
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	677

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_YUCGL (Photosystem II reaction center protein L OS=Yucca glauca GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_WHEAT (Photosystem II reaction center protein L OS=Triticum aestivum GN=psbL PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_TROAR (Photosystem II reaction center protein L OS=Trochodendron aralioides GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_TRACE (Photosystem II reaction center protein L OS=Trachelium caeruleum GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_TOBAC (Photosystem II reaction center protein L OS=Nicotiana tabacum GN=psbL PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_THUPL (Photosystem II reaction center protein L OS=Thuja plicata GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_TAXBR (Photosystem II reaction center protein L OS=Taxus brevifolia GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_STEPS (Photosystem II reaction center protein L OS=Stewartia pseudocamellia GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_SPIOL (Photosystem II reaction center protein L OS=Spinacia oleracea GN=psbL PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]

BLAST of CK939147 vs. ExPASy Swiss-Prot
Match: PSBL_SPAWA (Photosystem II reaction center protein L OS=Spathiphyllum wallisii GN=psbL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:   70 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 183
            MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct:    1 MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

The following BLAST results are available for this feature:

BLAST of CK939147 vs. ExPASy Swiss-Prot

BLAST of CK939147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181


Match Name	E-value	Identity	Description
PSBL_YUCGL	6.890e-15	100.00	Photosystem II reaction center protein L OS=Yucca ...	[more]
PSBL_WHEAT	6.890e-15	100.00	Photosystem II reaction center protein L OS=Tritic...	[more]
PSBL_TROAR	6.890e-15	100.00	Photosystem II reaction center protein L OS=Trocho...	[more]
PSBL_TRACE	6.890e-15	100.00	Photosystem II reaction center protein L OS=Trache...	[more]
PSBL_TOBAC	6.890e-15	100.00	Photosystem II reaction center protein L OS=Nicoti...	[more]
PSBL_THUPL	6.890e-15	100.00	Photosystem II reaction center protein L OS=Thuja ...	[more]
PSBL_TAXBR	6.890e-15	100.00	Photosystem II reaction center protein L OS=Taxus ...	[more]
PSBL_STEPS	6.890e-15	100.00	Photosystem II reaction center protein L OS=Stewar...	[more]
PSBL_SPIOL	6.890e-15	100.00	Photosystem II reaction center protein L OS=Spinac...	[more]
PSBL_SPAWA	6.890e-15	100.00	Photosystem II reaction center protein L OS=Spathi...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004433_F07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939147 ID=CK939147; Name=CK939147; organism=Citrus sinensis; type=EST; length=677bp
TTTTTTTTTTGGGGTCAATATCAGCAATGCAGTTCATCCAACGCTAAACC
TAATCGGAATTAGAGAGCTATGACACAATCAAACCCAAACGAACAAAATG
TTGAATTGAACCGTACCAGTCTCTACTGGGGGTTATTGCTCATTTTTGTA
CTTGCTGTTTTATTTTCCAATTACTTCTTCAATTAAGAGAAGAAAAGAGA
ATAGTATAAGAATCCAAAATAGTAGGAATTCTCTTATCCCATTCGGAAGA
AGCGCATCTTATAATTATCTATGACTGTTTATGTCTCTAGCGTGACCACT
TGCAAAAATGTGCAAAAATGTGGAGGGAAGCGGGATAAATGGCCGATACT
ACTGGAAGGATTCCCCTTTGGATAATAGGAACTGTAACTGGTATTCTTGT
GATCGGTTTAATAGGCATTTTCTTTTATGGTTCATATTCCGGATTAGGTT
CGTCCTTGTAGTAATCGAATGAACTGCGTTATAGACATAAAAGCGTAAGA
ACTCAAGGTACCCTGTCGTTCCCGTGCTTTGTCTGATTCGAGGGGTAGGG
CCAGGGCCCCTTGAGTTCTTAATAAACATAATATTTTGGTTTGCTCGTAT
AAATGGAAAAAACGGATCGCTTTTTCCGATGCTTCAAAAAAATCCATTTC
ATTTTTTTCTGATTTCTGATGATTTTT