CX675616

Overview
NameCX675616
Unique NameCX675616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig889 contig Csv1_Contig889:290..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.447e-78
Identity = 147/171 (85.96%), Postives = 160/171 (93.57%), Query Frame = 2
Query:    2 FSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALAGRKDEGFFSANAAAQASRKSSPR 514
            F+ AYAELESTLSGLNVLVETYFAD+PAEA++TLTSLKGVTA+GFDLVRGTKTL+L+K+GFP GKYLFAGVVDGRNIWAND AASLS L+ LEG+VGKDKLVVSTSCSLLHTAVDL+NE KLDD  KSWLAFAAQKVVEVNALAKALAG+KDE  FSANAAA ASR+SSPR
Sbjct:  222 FTGAYAELESTLSGLNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDLINETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPR 392          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.037e-76
Identity = 144/171 (84.21%), Postives = 157/171 (91.81%), Query Frame = 2
Query:    2 FSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALAGRKDEGFFSANAAAQASRKSSPR 514
            F++AY+ELESTLSGLNV+VETYFAD+PAE ++ LT+LKGVT +GFDLVRG KTL+LIK GFP+GKYLFAGVVDGRNIWANDLAASLS L+ LEG+VGKDKLVVSTSCSLLHTAVDLVNE KLD   KSWLAFAAQKVVEVNALAKALAG KDE FFS NAAAQASRKSSPR
Sbjct:  222 FTKAYSELESTLSGLNVIVETYFADIPAETYKILTALKGVTGFGFDLVRGAKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLAASLSTLQSLEGIVGKDKLVVSTSCSLLHTAVDLVNEPKLDKEIKSWLAFAAQKVVEVNALAKALAGEKDEAFFSENAAAQASRKSSPR 392          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 3.939e-76
Identity = 144/171 (84.21%), Postives = 157/171 (91.81%), Query Frame = 2
Query:    2 FSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALAGRKDEGFFSANAAAQASRKSSPR 514
            FS AYA+LESTLSGLNV+VETYFADV AEA++TL SLKGVT YGFDLVRGTKTL+L+K+ FP+GKYLFAGVVDGRNIWANDLAASL+ L  LEGVVGKDKLVVSTSCS LHTAVDL+NE KLDD  KSWLAFAAQKV+EVNALAKAL+G+KDE FFSANAAA ASRKSSPR
Sbjct:  222 FSAAYADLESTLSGLNVVVETYFADVTAEAYKTLISLKGVTGYGFDLVRGTKTLDLVKAEFPSGKYLFAGVVDGRNIWANDLAASLATLEALEGVVGKDKLVVSTSCSFLHTAVDLINETKLDDEIKSWLAFAAQKVLEVNALAKALSGQKDEAFFSANAAALASRKSSPR 392          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 1.549e-72
Identity = 135/171 (78.95%), Postives = 154/171 (90.06%), Query Frame = 2
Query:    2 FSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALAGRKDEGFFSANAAAQASRKSSPR 514
            F++AYAELES+LSGL+ L+ETYFADVPA A++TLTSL G++ +GFDLVRG +T+ELIK GFP+GKYLFAGVVDGRNIWANDLA+S++ L+ LEG+VGKDKLVVSTS SLLHTAVDLVNE KLD   KSWLAFAAQK+VEVNALAKAL G KDE FFS NAAAQASRKSSPR
Sbjct:  221 FTKAYAELESSLSGLSTLIETYFADVPAPAYKTLTSLSGISGFGFDLVRGAQTIELIKGGFPSGKYLFAGVVDGRNIWANDLASSITTLQALEGIVGKDKLVVSTSSSLLHTAVDLVNEPKLDQEIKSWLAFAAQKIVEVNALAKALTGHKDEAFFSPNAAAQASRKSSPR 391          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_BURTA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.377e-26
Identity = 75/157 (47.77%), Postives = 93/157 (59.24%), Query Frame = 2
Query:   50 VLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALA-GRKD-EGFFSANAAAQASRKSSPR 514
            +LV TYF DV   A   L     V     DLVRG   L+   + +PA K L  G+VDGRN+W NDL  SL+ L  +   +G ++L ++TSCSLLH  VDL +E KLDD  K+WLAFA QK  EV AL  ALA GR      F A A A A+R++S R
Sbjct:  237 LLVATYFDDVSEHA--ALLKALPVAGLHVDLVRGDAQLDAFVADYPADKVLSCGIVDGRNVWRNDLDRSLARLAPVHETLG-ERLWIATSCSLLHAPVDLAHEPKLDDELKAWLAFAVQKTREVAALRDALAKGRAAVAAEFDAAAVAAAARRTSAR 390          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_BURPS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei GN=metE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.570e-24
Identity = 72/157 (45.86%), Postives = 91/157 (57.96%), Query Frame = 2
Query:   50 VLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALA-GRKD-EGFFSANAAAQASRKSSPR 514
            +LV TYF D    A   L     V     DLVR    L+   + +PA K L  G+VDGRN+W NDL  SL+ L  +   +G ++L V+TSCSLLH  VDL +E +LD+  K+WLAFAAQK  EV AL  AL  GR      F   AAA A+R++S R
Sbjct:  237 LLVATYFDDASEHA--ALLKALPVAGLHIDLVRADAQLDAFVADYPADKVLSCGIVDGRNVWRNDLDRSLARLAPVRDALG-ERLWVATSCSLLHVPVDLAHEPRLDEELKTWLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAAAAAARRTSAR 390          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_BURP6 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 668) GN=metE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.570e-24
Identity = 72/157 (45.86%), Postives = 91/157 (57.96%), Query Frame = 2
Query:   50 VLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALA-GRKD-EGFFSANAAAQASRKSSPR 514
            +LV TYF D    A   L     V     DLVR    L+   + +PA K L  G+VDGRN+W NDL  SL+ L  +   +G ++L V+TSCSLLH  VDL +E +LD+  K+WLAFAAQK  EV AL  AL  GR      F   AAA A+R++S R
Sbjct:  237 LLVATYFDDASEHA--ALLKALPVAGLHIDLVRADAQLDAFVADYPADKVLSCGIVDGRNVWRNDLDRSLARLAPVRDALG-ERLWVATSCSLLHVPVDLAHEPRLDEELKTWLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAAAAAARRTSAR 390          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_BURP1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=metE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24
Identity = 72/157 (45.86%), Postives = 91/157 (57.96%), Query Frame = 2
Query:   50 VLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALA-GRKD-EGFFSANAAAQASRKSSPR 514
            +LV TYF D    A   L     V     DLVR    L+   + +PA K L  G+VDGRN+W NDL  SL+ L  +   +G ++L V+TSCSLLH  VDL +E +LD+  K+WLAFAAQK  EV AL  AL  GR      F   AAA A+R++S R
Sbjct:  237 LLVATYFDDASEHA--ALLKALPVAGLHVDLVRADAQLDAFVADYPADKVLSCGIVDGRNVWRNDLDRSLARLAPVRDALG-ERLWVATSCSLLHVPVDLAHEPRLDEELKTWLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAAAAAARRTSAR 390          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_BURP0 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=metE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24
Identity = 72/157 (45.86%), Postives = 91/157 (57.96%), Query Frame = 2
Query:   50 VLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALA-GRKD-EGFFSANAAAQASRKSSPR 514
            +LV TYF D    A   L     V     DLVR    L+   + +PA K L  G+VDGRN+W NDL  SL+ L  +   +G ++L V+TSCSLLH  VDL +E +LD+  K+WLAFAAQK  EV AL  AL  GR      F   AAA A+R++S R
Sbjct:  237 LLVATYFDDASEHA--ALLKALPVAGLHVDLVRADAQLDAFVADYPADKVLSCGIVDGRNVWRNDLDRSLARLAPVRDALG-ERLWVATSCSLLHVPVDLAHEPRLDEELKTWLAFAAQKTREVAALRDALVKGRAAVAAEFDDAAAAAAARRTSAR 390          
BLAST of CX675616 vs. ExPASy Swiss-Prot
Match: METE_CANAL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Candida albicans GN=MET6 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.796e-24
Identity = 73/172 (42.44%), Postives = 98/172 (56.98%), Query Frame = 2
Query:    2 FSEAYAELESTLSGLNV---LVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGKYLFAGVVDGRNIWANDLAASLSVLRGLEGVVGKDKLVVSTSCSLLHTAVDLVNENKLDD*XKSWLAFAAQKVVEVNALAKALAGRKDEGFFSANAAAQASRKSS 508
            F EAY      L G +V   ++ TYF DV     + + +L  V  + FD VR  + L+ + S    G+ L AGVVDGRNIW  D A + +V++     VGKDK+VV+TS SLLHT VDL +E KLD   K W +FA QK+ EV  +AK ++G        ANAA+  +R  S
Sbjct:  234 FKEAY----DALVGADVPELILTTYFGDVRPN-LKAIENLP-VAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKASAVVQKAIEKVGKDKVVVATSSSLLHTPVDLESETKLDAVIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSES 399          
The following BLAST results are available for this feature:
BLAST of CX675616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
METE_ARATH1.447e-7885.965-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO1.037e-7684.215-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR3.939e-7684.215-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC1.549e-7278.955-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURTA6.377e-2647.775-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPS4.570e-2445.865-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP64.570e-2445.865-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP15.969e-2445.865-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURP05.969e-2445.865-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CANAL7.796e-2442.445-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63E07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63E07-I13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675616 ID=CX675616; Name=CX675616; organism=Citrus sinensis; type=EST; length=516bp
ATTCAGTGAGGCTTATGCCGAGCTAGAGTCAACTCTGTCTGGCTTGAATG
TTCTTGTTGAGACCTACTTTGCTGATGTTCCAGCTGAGGCATTCCAGACC
CTCACTTCTTTGAAGGGTGTCACCGCTTATGGATTTGATTTGGTTCGTGG
AACCAAGACCCTTGAATTGATCAAGAGTGGATTCCCTGCTGGCAAGTACC
TCTTTGCTGGAGTGGTTGATGGAAGGAACATTTGGGCCAATGATCTTGCT
GCTTCTCTTAGTGTTCTCCGGGGGCTTGAGGGTGTTGTTGGCAAAGACAA
GCTTGTGGTCTCCACCTCCTGCTCACTTCTTCACACTGCTGTTGATCTTG
TTAATGAGAACAAACTCGACGACTAANTCAAGTCATGGCTGGCATTTGCT
GCCCAGAAAGTTGTTGAAGTGAATGCATTGGCCAAGGCTTTGGCTGGCCG
AAAGGATGAGGGATTCTTCTCTGCCAATGCTGCAGCTCAGGCTTCAAGAA
AGTCCTCCCCGAGAGT
back to top