CK939143

Overview
NameCK939143
Unique NameCK939143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 5.873e-53
Identity = 92/112 (82.14%), Postives = 99/112 (88.39%), Query Frame = 3
Query:    3 GDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 338
            GDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCG+C+EI+C ND KWCLPG+I+VTATNFC          GGWCNPPQQHFDLSQPVFQ IAQYRAG+VPVAY+R
Sbjct:   38 GDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRR 149          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 7.179e-51
Identity = 88/112 (78.57%), Postives = 98/112 (87.50%), Query Frame = 3
Query:    3 GDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 338
            GDASGTMGGACGYGNLYSQGYGT+TAALSTALFNNGLSCGSC+EI+C ND KWCLPG+I+VTATNFC          GGWCNPP +HFDL+QPVFQ IAQYRAG+VPV+Y+R
Sbjct:   37 GDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRR 148          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 3.016e-49
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 3
Query:    6 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 338
            DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCG+C+EIKC +D  WCLPG I+VTATNFC          GGWCNPP  HFDLSQPVFQ IAQY+AGVVPV+Y+R
Sbjct:   42 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRR 152          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.335e-48
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 3
Query:    6 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRYA 344
            DASGTMGGACGYGNLYSQGYGTNTAALSTALFN G SCG+C++IKCV+DPKWC+ GTI VT TNFC          GGWCNPPQ HFDL+QP+F  IAQY+AGVVPV Y+R A
Sbjct:   41 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVA 153          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.823e-47
Identity = 81/113 (71.68%), Postives = 96/113 (84.96%), Query Frame = 3
Query:    6 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 338
            DASGTMGGACGYGNLYSQGYG NTAALSTALFNNGLSCGSC+E+KC+NDP WCLPG  +I++TATNFC          GGWCNPP++HFDL+ P+F  IA+Y+AG+VPV+Y+R
Sbjct:   44 DASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 8.214e-47
Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = 3
Query:    6 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 338
            DASGTMGGACGYGNLY QGYGTNTAALSTALFNNGL+CG+CYE+KC +DP+WCL  TI VTATNFC          GGWCNPP QHFDL++P F  IAQYRAG+VPV+++R
Sbjct:   42 DASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRR 152          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 8.214e-47
Identity = 82/115 (71.30%), Postives = 95/115 (82.61%), Query Frame = 3
Query:    6 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRYA 344
            DASGTMGGACGYGNLYSQGYGTNTAALST+LFN+G SCG+C+EIKCVNDPKWC PG  ++ VTATNFC          GGWCNPP+ HFDL+ PVF  IA+YRAG+VP++Y+R A
Sbjct:   46 DASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVA 160          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.073e-46
Identity = 81/113 (71.68%), Postives = 95/113 (84.07%), Query Frame = 3
Query:    6 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 338
            DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNG+SCG+C+E+KC NDP+WC  G  +I++TATNFC          GGWCNPP++HFDL+ PVF  IAQYRAG+VPV+Y+R
Sbjct:   43 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.549e-45
Identity = 79/113 (69.91%), Postives = 93/113 (82.30%), Query Frame = 3
Query:    6 DASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 338
            DASGTMGGACGYGNLYSQGYG NTAALSTALFNNG SCG+C+EIKC +DP+WC+PG  +I+VTATNFC          GGWCNPP++HFDL+ P+F  I  YRAG+VPV+Y+R
Sbjct:   48 DASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRR 160          
BLAST of CK939143 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.642e-45
Identity = 79/112 (70.54%), Postives = 92/112 (82.14%), Query Frame = 3
Query:    3 GDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 338
            GDASGTMGGACGYGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C N    CLPG+I VTATNFC          GGWCNPP+ HFD+++P F HIAQYRAG+VPV+++R
Sbjct:   35 GDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146          
The following BLAST results are available for this feature:
BLAST of CK939143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXPA1_ARATH5.873e-5382.14Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH7.179e-5178.57Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH3.016e-4978.38Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP14_ARATH3.335e-4874.34Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA9_ARATH2.823e-4771.68Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA8_ARATH8.214e-4772.97Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP16_ARATH8.214e-4771.30Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA4_ARATH1.073e-4671.68Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA3_ARATH1.549e-4569.91Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA4_ORYSJ2.642e-4570.54Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004433_F02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939143 ID=CK939143; Name=CK939143; organism=Citrus sinensis; type=EST; length=455bp
GTGGCGATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTG
TATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTT
CAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGTGTGTTAATG
ACCCCAAATGGTGCTTGCCCGGCACCATTATGGTCACAGCTACCAATTTT
TGCCCACCGAACAACGCCCTCCCCAACAATGCAGGCGGTTGGTGCAATCC
TCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTC
AATACAGAGCTGGAGTTGTCCCTGTAGCTTACAAGAGGTATGCTCTCTTG
GTTTTAAGCTCAACAAGTGGTAATTAATGTTCGTTAACTAGAGATTAAAA
CCATACTCTTATATTGTCCCCGCTTACTATTGCTCTAGTCTAGTGGCCCA
ATGCT
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