CK939142

Overview
NameCK939142
Unique NameCK939142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length267
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939142 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.337e-18
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   75 MSDTCGNCDCADRSQCVKKGSSYAADXXXXXXXXXXXXXXMDVQAAETEGNCKCGPTCACVNCT 266
            MSDTCGNCDCAD++QCVKKGSSY AD              MD  AAE +G CKCGP+C+C NCT
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTAD--IIETEKSIMTVVMDAPAAENDGKCKCGPSCSCTNCT 62          
BLAST of CK939142 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.183e-13
Identity = 35/64 (54.69%), Postives = 38/64 (59.38%), Query Frame = 3
Query:   75 MSDTCGNCDCADRSQCVKKGSSYAADXXXXXXXXXXXXXXMDVQAAETEGNCKCGPTCACVNCT 266
            MSD CGNCDCAD SQCVKKG+S                  M V AAE+ G CKCG +C CVNCT
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI---DIVETDKSYIEDVVMGVPAAESGGKCKCGTSCPCVNCT 61          
BLAST of CK939142 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 3
Query:   75 MSDTCGNCDCADRSQCVKKGSSYAADXXXXXXXXXXXXXXMDVQAAETEGNCKCGPTCACVNC 263
            MSD CGNCDCAD+SQCVKKG+SY                  +V A E  G CKCG +C+C +C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGV-----VIVEAEKSHFEEVAAGEENGGCKCGTSCSCTDC 58          
BLAST of CK939142 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.008e-12
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 3
Query:   75 MSDTCGNCDCADRSQCVKKGSSYAADXXXXXXXXXXXXXXMDVQAAETEGNCKCGPTCACVNC 263
            MSD CGNCDCAD+SQCVKKG+SY                  +V A E  G CKCG +C+C +C
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGV-----VIVEAEKSHFEEVAAGEENGGCKCGTSCSCTDC 58          
BLAST of CK939142 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.234e-12
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 3
Query:   75 MSDTCGNCDCADRSQCVKKGSSYAADXXXXXXXXXXXXXXMDVQAAETEGNCKCGPTCACVNC 263
            MS  C NCDC+D SQC KKG S+                 MD  AAE  GNCKCGP+CACV+C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDL-VIVETENRSMDTVIMDAPAAENGGNCKCGPSCACVDC 62          
BLAST of CK939142 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 30/60 (50.00%), Postives = 36/60 (60.00%), Query Frame = 3
Query:   84 TCGNCDCADRSQCVKKGSSYAADXXXXXXXXXXXXXXMDVQAAETEGNCKCGPTCACVNC 263
            TCGNCDC D+SQCVKKG+SY  D              +  +AAE +G CKCG  CAC +C
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGID-IVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTDC 61          
BLAST of CK939142 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.431e-11
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 3
Query:   75 MSDTCGNCDCADRSQCVKKGSSYAADXXXXXXXXXXXXXXMDVQAAETEGNCKCGPTCACVNCT 266
            MS  C NCDCAD +QCVKKG+SY                 +D  AAE +G CKCG  C+CV+CT
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDL-VIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCVSCT 63          
The following BLAST results are available for this feature:
BLAST of CK939142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA8.337e-1860.94Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE6.183e-1354.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3A_ORYSJ4.008e-1249.21Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI4.008e-1249.21Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_PRUAV5.234e-1250.79Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MUSAC6.836e-1250.00Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_MALDO4.431e-1148.44Metallothionein-like protein type 3 OS=Malus domes... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004433_H03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939142 ID=CK939142; Name=CK939142; organism=Citrus sinensis; type=EST; length=267bp
AAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTAAA
TTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGA
CTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTG
ACTTCGTCGAGACTGNNNNGAGCTTTGTCAGCACCGTTGTTGTCATGGAC
GTTCAGGCTGCTGAGACTGAAGGGAACTGCAAGTGCGGCCCCACCTGCGC
TTGTGTGAACTGCACTT
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