CK939140

Overview
NameCK939140
Unique NameCK939140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.862e-55
Identity = 110/160 (68.75%), Postives = 124/160 (77.50%), Query Frame = 3
Query:   84 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            MDFR+MGL+S PLF TLQHMM+M  D + DNK+ NAPT +YVRDAKA+A TPADVKEYPNSYVF +DMPGLKSGDIKVQVEDDN+LLI            AKY+RMERRVGK MRKFVLPENAN +AISAVCQDGVL+VTV            TI+VK+A
Sbjct:    1 MDFRVMGLES-PLFHTLQHMMDMSEDGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.487e-53
Identity = 106/160 (66.25%), Postives = 121/160 (75.62%), Query Frame = 3
Query:   84 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            MD R++G+D++PLF TL HMME   +DS      NAP++ YVRDAKA+A TPADVKEYPNSYVF+VDMPGLKSGDIKVQVE+DNVLLIS           AK++RMERRVGKFMRKF LPENAN +AISAVCQDGVLTVTV            TIEVK+A
Sbjct:    1 MDLRLLGIDNTPLFHTLHHMMEAAGEDSV-----NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.116e-48
Identity = 100/155 (64.52%), Postives = 118/155 (76.13%), Query Frame = 3
Query:   99 MGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            M LDS PLF+TL H+M++   D    K+ NAPTRTYVRDAKA+A TPADVKE+PNSYVF+VDMPG+KSGDIKVQVED+NVLLIS            KY++MERR+GK MRKFVLPENAN+EAISA+ QDGVLTVTV+           TI+VK+A
Sbjct:    1 MDLDS-PLFNTLHHIMDL--TDDTTEKNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.224e-45
Identity = 102/160 (63.75%), Postives = 114/160 (71.25%), Query Frame = 3
Query:   84 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS-XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKI 560
            MD R+MG D  PLF    H+M+   DD + N S  AP+RT++ DAKA+A TPADVKEYPNSYVFI+DMPGLKSGDIKVQV+ DNVL IS            AKYVRMERRVGK MRKFVLPENAN E I+AVCQDGVLTVTV+           TIEVKI
Sbjct:    1 MDLRLMGFDH-PLF---HHIMDYAGDDKSSNSS--APSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.311e-43
Identity = 93/157 (59.24%), Postives = 113/157 (71.97%), Query Frame = 3
Query:   96 IMGLDSSPLFSTLQHMMEMGADDSADNKSFNA-PTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            +MG D  PL   L +++E   D++  NKS N+ P+R YVRDA+A+A TPADVKE PNSYVFIVDMPGLKSGDIKVQVE DNVL+IS            KYVRMERR+GKFM+KF LPE+AN + ISA+CQDGVLTVTV+           TI+V++A
Sbjct:    6 LMGFD--PLLRNLHYILEATDDNTTGNKSNNSGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.656e-41
Identity = 96/167 (57.49%), Postives = 111/167 (66.47%), Query Frame = 3
Query:   84 MDFRIMGLDS----SPLFSTLQHMMEMGAD-DSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS--XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            MD R  GL +      L ST+Q M++   D D A       P R YVRDAKA+A TPADVKEYPNSYVFI DMPG+K+ +IKVQVEDDNVL++S              KY+RMERRVGKFMRKFVLPENANVEAI+AV QDGVL VTV+           T+EVK+A
Sbjct:    1 MDLRNFGLSNFGLEPQLLSTIQDMLDFADDHDRAGRAPPEQPIRAYVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.818e-41
Identity = 89/165 (53.94%), Postives = 118/165 (71.52%), Query Frame = 3
Query:   84 MDFRIMGLDSSPLFSTLQHMMEMGADDSA---DNK--SFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            MD  + GL++ PL + LQH++++   D+    DNK  S  + TRTYVRDA+A+A TPADVKE P +Y F+VDMPGL +GDI+VQVED+ VL++S           AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIEVK+A
Sbjct:    1 MDAVMFGLET-PLMAALQHLLDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.123e-40
Identity = 90/163 (55.21%), Postives = 114/163 (69.94%), Query Frame = 3
Query:   84 MDFRIMGLDSSPLFSTLQHMMEMGADDSA---DNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            MD R+ GL++ PL   LQH++++   D+    D      PTRTYV DA+A+A TPADVKE P +Y F+VDMPGL +GDIKVQVED+ VL+IS           AKY+RMERR+GKFMRKFVLP+NA+++ ISAVC+DGVLTVTV+           TIEVK+A
Sbjct:    1 MDGRMFGLET-PLMVALQHLLDVPDGDAGAGGDKAGGGGPTRTYVADARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVIS-GERRREEREDAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 87/167 (52.10%), Postives = 115/167 (68.86%), Query Frame = 3
Query:   84 MDFRIMGLDSSPLFSTLQHMMEM--GADDSADNK-SFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLIS----XXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            M+  + GL++ PL + LQH++++  G   +A  + +   PTR YVRDA+A+A TPADVK+ P +Y F+VDMPGLKS DIKVQVE++ +L+IS                KY+RMERR+GKFMRKFVLP+NA+V+ ISAVCQDGVLTVTV+           TIEVK+A
Sbjct:    1 MESAMFGLET-PLMTALQHLLDIPDGEGGAAGKQGATGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
BLAST of CK939140 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.986e-38
Identity = 84/160 (52.50%), Postives = 112/160 (70.00%), Query Frame = 3
Query:   84 MDFRIMGLDSSPLFSTLQHMMEMGADDSADNKSFNAPTRTYVRDAKAVAGTPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 563
            MD R+ GL++ P  + L H++++   D A   +    TRTYVRDA+A+A TPADVKE   +Y F+VDMPGL +GDI+VQVED+ VL+IS           AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIE+K+A
Sbjct:    1 MDARMFGLET-PRVAALHHLLDVPDGDKAGGGA----TRTYVRDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVIS-GERRREEREDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
The following BLAST results are available for this feature:
BLAST of CK939140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSP21_SOYBN5.862e-5568.7517.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_SOLPE5.487e-5366.2517.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA3.116e-4864.5217.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI3.224e-4563.7517.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_HELAN2.311e-4359.2417.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP22_IPONI1.656e-4157.4918.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_MAIZE4.818e-4153.9417.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_MAIZE3.123e-4055.2117.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP18_ORYSJ2.923e-3852.1018.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP23_MAIZE4.986e-3852.5017.0 kDa class II heat shock protein OS=Zea mays G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004433_H01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939140 ID=CK939140; Name=CK939140; organism=Citrus sinensis; type=EST; length=628bp
GGGGAACCAACAAAATACGAACGAACGAACGAATCCTCATTTAGCAGTAG
CGAACATCAACAACAGCTAATACTCGCAAAAGAATGGATTTCAGAATCAT
GGGTTTGGACTCATCGCCACTCTTTTCAACTCTGCAGCACATGATGGAGA
TGGGGGCGGACGACTCCGCTGACAACAAGTCATTCAACGCGCCGACGCGC
ACGTACGTGAGAGACGCCAAGGCAGTGGCGGGGACGCCTGCGGACGTAAA
GGAGTATCCGAACTCGTACGTGTTCATCGTCGACATGCCCGGACTGAAGT
CGGGGGACATCAAGGTCCAAGTGGAGGACGACAATGTGCTGCTCATAAGC
GGAGAGAGGAAGCGGGAGGAGGAGAAAGAGGGGGCCAAGTATGTGAGAAT
GGAGAGGAGGGTCGGCAAGTTTATGAGGAAATTTGTGCTGCCTGAGAATG
CTAACGTTGAAGCCATTTCGGCTGTGTGTCAGGACGGAGTGTTGACTGTG
ACCGTCGATAAGCTGCCACCGCCGGAGCCCAAGAAGCCCAAGACCATTGA
GGTTAAGATTGCTTGAACTTTAAAGAGAGAGAATATGCTGGATTGTGGGT
GCTGATGTCTTTTCTATTTGCCGGTTGT
back to top