CK939110

Overview
NameCK939110
Unique NameCK939110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939110 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 58/172 (33.72%), Postives = 76/172 (44.19%), Query Frame = 2 
Query:    2 LRPVYASTGXXXXXXXXXXXXXXDMTTLSPLSLGXXXXXXXXXXXXXXXXXXXXXXXKSGNLWQNKVN-LTPPALQLPGSRLKTTFSARDLDLLL-----GLENRTSNLQQQLLDEIXXXXXXXXXXXXXXRIGDVN-RNLDEVFESLDPSMLSQLQGVSQKQSTPTQLQSP 496
            LRPV ASTG              +M+ +SPL+LG                       ++G LWQN+VN LTPP LQL GSRLK+T SARD+D+ +     GL+NR                          R+GD+   NL+E F S D + + QLQ  S+         SP
Sbjct:  315 LRPVNASTGSAMVSPRSSNQSP-EMSVMSPLTLGSSPMNSPMANGVPLSP-------RNGGLWQNRVNSLTPPPLQLNGSRLKSTLSARDMDMEMELRFRGLDNR--------------------------RLGDLKPSNLEETFGSYDSASVMQLQSPSRHSQMNHYPSSP 452
The following BLAST results are available for this feature:
BLAST of CK939110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C3H29_ARATH3.191e-1133.72Zinc finger CCCH domain-containing protein 29 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004434_A05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939110 ID=CK939110; Name=CK939110; organism=Citrus sinensis; type=EST; length=500bp
GTTGCGCCCTGTATATGCATCCACGGGTTCAGCTATGCCTTCACCTAGCC
CTGTTTCAGCCAGTGCAGTGGACATGACGACTTTGAGTCCCTTGTCTCTT
GGGTCAGCATCTATGCCATTGCCCGCTACTTCAACTCCACCAATGTCTCC
CTTGGCTGCTGCTTCCTCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAG
TTAATCTTACTCCACCGGCCTTGCAGTTGCCAGGTAGCAGGTTGAAGACC
ACTTTTAGTGCAAGAGATTTGGACTTGTTGCTTGGGCTAGAAAATCGCAC
TAGCAATTTGCAGCAACAATTATTGGATGAGATATCTAGTCTCTCCTCCC
CATCTTCTTGGAGCAAGGAATACAGTAGGATTGGAGATGTGAATCGAAAC
CTTGACGAAGTTTTCGAATCTCTTGATCCTTCTATGTTGTCTCAGTTGCA
GGGAGTGTCACAGAAACAATCAACGCCAACTCAGTTGCAATCTCCAACCG
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