CN188023

Overview
NameCN188023
Unique NameCN188023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB2_ARCFU (Tryptophan synthase beta chain 2 OS=Archaeoglobus fulgidus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.940e-40
Identity = 75/110 (68.18%), Postives = 89/110 (80.91%), Query Frame = 3
Query:  438 EIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIYRLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            E+P +WYNV+ DL    PPPLHP T EPVKPEDL P+FP  LI+QE S +R+I IP++V +IYR+WRPTPL+RA+RLEK L TPARIY+KYEG SP GSHKPNTAV Q Y
Sbjct:   15 EMPKEWYNVLPDLPEPLPPPLHPATQEPVKPEDLEPIFPKGLIQQEMSGERWIRIPEDVREIYRIWRPTPLVRAERLEKALKTPARIYFKYEGASPPGSHKPNTAVAQAY 124          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB2_METAC (Tryptophan synthase beta chain 2 OS=Methanosarcina acetivorans GN=trpB2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.120e-38
Identity = 70/110 (63.64%), Postives = 90/110 (81.82%), Query Frame = 3
Query:  438 EIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIYRLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            E+P +WYNV+ADL     PPL P+T++P+ P+ L P+FP  LI QE S+DR+IDIP+EVLD+YRLWRP+PL RA +LEK+L +PA+IYYKYEGVSPAGSHK NT++ Q Y
Sbjct:   22 EMPKKWYNVLADLPSPIDPPLDPRTWQPISPDALEPIFPKALIMQEMSSDRYIDIPEEVLDVYRLWRPSPLFRAHQLEKVLKSPAKIYYKYEGVSPAGSHKTNTSIAQAY 131          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB2_METMA (Tryptophan synthase beta chain 2 OS=Methanosarcina mazei GN=trpB2 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 70/110 (63.64%), Postives = 89/110 (80.91%), Query Frame = 3
Query:  438 EIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIYRLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            E+P +WYNV++DL     PPL P+T++P+ PE L P+F  ELI+QE S+DR+IDIP E+LD+YRLWRP+PL RA +LEK L TPA+IYYKYEGVSPAGSHK NT++ Q Y
Sbjct:   22 EMPKRWYNVLSDLPSPIDPPLDPRTWQPINPEALEPIFAKELIRQEMSSDRYIDIPAEILDVYRLWRPSPLFRAHQLEKDLKTPAKIYYKYEGVSPAGSHKTNTSIAQAY 131          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB2_THEMA (Tryptophan synthase beta chain 2 OS=Thermotoga maritima GN=trpB2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.204e-36
Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 3
Query:  432 PVEIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIYRLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            P EIP  WYNV+ADL  K  PPL P+T +P+ PE LS +FP  LI+QE S +RFI+IP+ VL  Y ++RPTPLIRA  LE+ L TPARIYYKYEGVSP GSHKPNTA+ Q Y
Sbjct:    9 PEEIPKHWYNVLADLPFKLDPPLDPETKQPISPEKLSVIFPMSLIEQEVSEERFIEIPEPVLKEYAVYRPTPLIRATFLEEYLQTPARIYYKYEGVSPTGSHKPNTAIAQAY 120          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB2_AQUAE (Tryptophan synthase beta chain 2 OS=Aquifex aeolicus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.851e-33
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  438 EIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIYRLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            EIP +W N++  L     PPL P+T EPVKPE L  +FP+ L++QE S   +IDIP+EVLDIY LWRPTPL RAK LE+ L TPA+I+YK E VSP GSHKPNTAV Q Y
Sbjct:   10 EIPKKWLNILPLLPEPLEPPLDPETMEPVKPEKLLAIFPEPLVEQEVSDKEWIDIPEEVLDIYSLWRPTPLHRAKNLEEFLGTPAKIFYKNESVSPPGSHKPNTAVAQAY 119          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB_THEAB (Tryptophan synthase beta chain OS=Thermosipho africanus (strain TCF52B) GN=trpB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 3
Query:  438 EIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEAS-TDRFIDIPDEVLDIYRLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            E+P  WYNV++DL  K  PPL P+T +P+ PE L  +FP  L++QE + TD+FIDIP+E+L  Y ++RPTPLIRA  LE+ L TPA+IYYKYEG SP GSHK NTA+ Q Y
Sbjct:   11 EMPKVWYNVLSDLPFKLDPPLDPETNKPMSPEKLLKIFPAPLLEQEVNDTDKFIDIPEEILKEYAVYRPTPLIRANFLEEYLQTPAKIYYKYEGQSPTGSHKTNTALAQAY 121          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB2_AERPE (Tryptophan synthase beta chain 2 OS=Aeropyrum pernix GN=trpB2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 3
Query:  438 EIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIYRLW--RPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            E+P  WYN++ DL  + PPPL+PKT EPV P  L+ LFP  LI+QE S +R+I+IP EV + Y  +  RPTPL+RA  LE+ L+TPA IYYKYEGV+P GSHK NTA+ Q Y
Sbjct:   14 EVPTSWYNILPDLPEEVPPPLNPKTGEPVDPSALAKLFPKALIEQEVSRERYIEIPGEVHEAYISFARRPTPLLRAVNLERALNTPAEIYYKYEGVTPTGSHKINTALAQAY 125          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB_THELT (Tryptophan synthase beta chain OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=trpB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = 3
Query:  438 EIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIYRLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            EIP  WYNV++DL  K  PPL PKT +P+ P+ LS +FP  LI+QE +  R I IP+ VL+ Y ++RPTPL RA  LE+ L TPARIYYKYEG SP GSHK NTA+ Q Y
Sbjct:   11 EIPRYWYNVLSDLPFKLDPPLDPKTKQPISPDMLSAIFPMPLIEQEVTDKREIPIPEPVLEEYAVFRPTPLFRATYLEEFLQTPARIYYKYEGASPTGSHKTNTALAQAY 120          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB2_PYRKO (Tryptophan synthase beta chain 2 OS=Pyrococcus kodakaraensis GN=trpB2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.267e-30
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  420 AVALPVEIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIY-RLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            AV    +IP +WYN++ DL     PPL P+T EP++PE L  +F +EL+KQE STDR+I+IP EV +IY ++ RPTPL RA  LE+ L TPARIY+KYEG +  GSHK NTA+ Q Y
Sbjct:    3 AVLPDSKIPKRWYNILPDLPEPLAPPLDPETDEPMEPEKLLRIFAEELVKQEMSTDRYIEIPKEVREIYSKIGRPTPLFRATNLERALGTPARIYFKYEGATVTGSHKINTALAQAY 119          
BLAST of CN188023 vs. ExPASy Swiss-Prot
Match: TRPB_THEGJ (Tryptophan synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=trpB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.621e-29
Identity = 63/117 (53.85%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  420 AVALPVEIPCQWYNVIADLSVKPPPPLHPKTFEPVKPEDLSPLFPDELIKQEASTDRFIDIPDEVLDIY-RLWRPTPLIRAKRLEKILDTPARIYYKYEGVSPAGSHKPNTAVPQVY 767
            AV    +IP +WYN++ DL     PPL P+T EP++PE L  +F +EL+KQE ST+R+I+IP +V ++Y ++ RPTPL RA  LEK L TPARIY+KYEG +  GSHK NTA+ Q Y
Sbjct:    3 AVLPDSKIPKRWYNILPDLPEPLAPPLDPETDEPIEPEKLLRIFAEELVKQEMSTERYIEIPKKVRELYAKIGRPTPLFRATNLEKALGTPARIYFKYEGATVTGSHKINTALAQAY 119          
The following BLAST results are available for this feature:
BLAST of CN188023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TRPB2_ARCFU5.940e-4068.18Tryptophan synthase beta chain 2 OS=Archaeoglobus ... [more]
TRPB2_METAC1.120e-3863.64Tryptophan synthase beta chain 2 OS=Methanosarcina... [more]
TRPB2_METMA5.560e-3863.64Tryptophan synthase beta chain 2 OS=Methanosarcina... [more]
TRPB2_THEMA5.204e-3664.29Tryptophan synthase beta chain 2 OS=Thermotoga mar... [more]
TRPB2_AQUAE1.851e-3361.82Tryptophan synthase beta chain 2 OS=Aquifex aeolic... [more]
TRPB_THEAB2.263e-3158.56Tryptophan synthase beta chain OS=Thermosipho afri... [more]
TRPB2_AERPE2.955e-3158.04Tryptophan synthase beta chain 2 OS=Aeropyrum pern... [more]
TRPB_THELT3.859e-3159.09Tryptophan synthase beta chain OS=Thermotoga letti... [more]
TRPB2_PYRKO4.267e-3055.56Tryptophan synthase beta chain 2 OS=Pyrococcus kod... [more]
TRPB_THEGJ1.621e-2953.85Tryptophan synthase beta chain OS=Thermococcus gam... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188023 ID=CN188023; Name=CN188023; organism=Citrus sinensis; type=EST; length=767bp
GAGGATTTAACGTAACATGCATCAACAAGATGTTGCACCCAACAAATTTA
AAATGTTGCTTTCTCTTGAAACTGTTCTGAGTTGTTGGATGTAATGTCTA
CGTATGATGTTACATATAATGTAGCATAGCCCTGGCCTTAAAGATAAGAA
CAAAAAAGTTCTCGGCGGTCAACGAAATTTACCTCGCCGCACCAGCATCG
TCACACCATCACTTACTAGTTTCTCAGGACAACTGCAGAAACTTTCTGAA
AATGGCTGCACAATCACTTTTATATGCAAATTTAAACCCACTGCTCATTT
CCGGGTCAACAGGAAACCAGATCAAAGCTGGGGAACAATTTCTTGGGTCT
TTTCCATTGAAGGCAAAGACTACACGCCCGAGGCTTTCAAATGGCTGTAG
AGTAAGAGCAGCTGCGACTGCTGTTGCGTTACCGGTTGAAATTCCTTGTC
AGTGGTACAATGTGATTGCAGACCTATCAGTGAAACCTCCTCCTCCGTTG
CATCCCAAAACTTTTGAACCTGTCAAACCTGAAGATTTGTCTCCTCTATT
CCCTGATGAGTTGATTAAGCAAGAGGCAAGCACTGACAGGTTCATAGATA
TCCCTGATGAAGTTCTTGATATATACAGGCTTTGGCGTCCAACGCCTCTA
ATAAGAGCCAAGAGGTTGGAGAAGATTCTAGATACGCCCGCCAGAATTTA
CTACAAATATGAAGGTGTCAGCCCAGCTGGATCTCACAAACCTAACACTG
CAGTTCCACAAGTGTAT
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