CX675603

Overview
NameCX675603
Unique NameCX675603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675603_ssr133 microsatellite CX675603_ssr133:133..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX675603 vs. ExPASy Swiss-Prot
Match: HA22D_ARATH (HVA22-like protein d OS=Arabidopsis thaliana GN=HVA22D PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.476e-11
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = -1 
Query:  226 IPIWYTVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHRKSSPTGTGKGKNKFVDFIMPKKGEHEAY 459
            IPIWYTVKLV  AWLVLPQF+GAAFIY R VR+Q +++   +  H      S PT     K   +  I P +  HEA+
Sbjct:   67 IPIWYTVKLVFVAWLVLPQFQGAAFIYNRVVREQFKKHGVLRSTH------SKPT-----KPNILHSIFPHREGHEAH 133
[Close]
BLAST of CX675603 vs. ExPASy Swiss-Prot
Match: HVA22_HORVU (Protein HVA22 OS=Hordeum vulgare GN=HVA22 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = -1 
Query:  310 IPIWYTVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQHR 459
            IP+WY VKL+  AWL LPQF+GA+FIY++ VR+Q+R+YRG   +    H+
Sbjct:   67 IPVWYPVKLLFVAWLALPQFKGASFIYDKVVREQLRKYRGRNRNGDADHK 116
[Close]
BLAST of CX675603 vs. ExPASy Swiss-Prot
Match: HA22E_ARATH (HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = -1 
Query:  316 IPIWYTVKLVLAAWLVLPQFRGAAFIYERFVRQQIRQYRGGKDHHQHQ 459
            IPIWYT KLV  AWLVLPQFRGAAFIY + VR+Q ++Y   K   +HQ
Sbjct:   67 IPIWYTAKLVFVAWLVLPQFRGAAFIYNKVVREQFKKYGILKPKVEHQ 114
The following BLAST results are available for this feature:
BLAST of CX675603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HA22D_ARATH1.476e-1148.72HVA22-like protein d OS=Arabidopsis thaliana GN=HV... [more]
HVA22_HORVU3.288e-1154.00Protein HVA22 OS=Hordeum vulgare GN=HVA22 PE=2 SV=... [more]
HA22E_ARATH3.288e-1164.58HVA22-like protein e OS=Arabidopsis thaliana GN=HV... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63D10-G19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675603 ID=CX675603; Name=CX675603; organism=Citrus sinensis; type=EST; length=507bp
TTTTTTTGATCACTAATTTCTTCATTAAAGCGTCACAGAAGCTTTGAAAG
TCGCAAACTTGTAAACTTGTGCACGGGTTAAAAGTTAAAGCTTTCATCTA
TACAACAATCACCAAGAGAGAAGATTAACCTAAAAGCAAAGCAAAGCAAA
GCACAAAGCAACAGAAGCTCGACACACGAACACGAGCCAACGGAGATTCT
TCTCTTCTTTTCTTGTAGTTGGTTAGTATGCCTCGTGCTCCCCTTTCTTC
GGCATAATAAAGTCCACAAACTTGTTCTTGCCCTTGCCAGTGCCAGTAGG
AGAAGACTTGCGATGCTGATGCTGATGATGATCTTTACCTCCTCTGTACT
GCCTAATTTGCTGTCTGACAAACCTTTCATATATAAAAGCCGCACCTCTG
AACTGTGGCAGAACCAGCCATGCCGCTAGCACTAGCTTCACCGTGTACCA
AATTGGTATCCTAAAATTTAATTATTCATAACATGACTTATCACGTATAA
AAACCCT
back to top