CK939073

Overview
NameCK939073
Unique NameCK939073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.750e-46
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            +IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  265 IIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.546e-45
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            +IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  265 IIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.546e-45
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAIEKLG RH EHIAAYG+GNERRLTGRHETADINTFSWGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  265 VIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 88/92 (95.65%), Postives = 88/92 (95.65%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  265 VIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.325e-45
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAI+KLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  265 VIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.342e-45
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIK AIEKLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  265 VIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.674e-45
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            VIKKAIEKL  RH EHI+AYGEGNERRLTGRHETAD+NTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  266 VIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.263e-44
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 279
            +IKKAIEKLG RH EHIAAYGEGNERRLTG+HET DINTFSWGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  265 IIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 273
            VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  265 VIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of CK939073 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 1
Query:    4 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 276
            VIK+AIEKLG+RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIA+TTILWK
Sbjct:  265 VIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWK 355          
The following BLAST results are available for this feature:
BLAST of CK939073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GLNA1_ALNGL8.750e-4694.57Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_VITVI2.546e-4594.57Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA2_PHAVU2.546e-4593.48Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA1_VITVI3.325e-4595.65Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA3.325e-4594.57Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_VIGAC4.342e-4594.57Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA_PINSY9.674e-4592.39Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA3_MEDSA1.263e-4490.22Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA_LACSA1.650e-4496.67Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA5_MAIZE1.650e-4493.41Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004434_F08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939073 ID=CK939073; Name=CK939073; organism=Citrus sinensis; type=EST; length=634bp
GGGGTGATCAAGAAGGCAATTGAAAAGTTGGGGAAACGCCACGGGGAACA
CATTGCTGCTTATGGTGAGGGCAACGAAAGAAGACTGACAGGTCGACATG
AAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGAGGTGCC
TCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATACTTTGA
AGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTTCAATGA
TCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTGAGCATG
GATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAACCCACC
ACAAAAATAATTCTTATGTTTTTATAATTTGTCTATGCATTTAAGTCTGT
TGTTTGAATTTGTTCCTTGCCATTCAAAACTGTGCTCTGTTTCTCTTGTA
CTTCATTGTTTGGGATGCTCAGTTGTGATTACTATATTATAGTTTAAAAC
TACTTCGCTTCTGTTTAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAATAAGTAAAAAAATTAAAAAAAAACAAAAAAAANNNNAAAAAAAAAA
AACTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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