CX675602

Overview
NameCX675602
Unique NameCX675602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675602_ssr125 microsatellite CX675602_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.213e-76
Identity = 136/180 (75.56%), Postives = 156/180 (86.67%), Query Frame = -2
Query:  145 CEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 684
            C+PDETLAVN AFKL+R+PDESV TENPRDELLRRVKGL P VVTLVEQE N+NTAPF+ RV+E+CA YGAL +S+ESTV   +SDR KVEEG+ RKL N+VACEG DR+ERCEVFGKWR RM MAGFEL P+S+ IAESM++R   GNRV+PGFTVKE+NGG+CFGWMGR LTV SAWR
Sbjct:  464 CDPDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGIGRKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSR---GNRVHPGFTVKEDNGGVCFGWMGRALTVASAWR 640          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.909e-44
Identity = 93/179 (51.96%), Postives = 119/179 (66.48%), Query Frame = -2
Query:  145 PDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 678
            P E LAVNFAF L  MPDESVSTEN RD LLR VK LSP VVTLVEQE+NTNTA F  R  E   YY A+F+SI+ T+ RDH  R+ VE+  L+R + N +ACEG DRVER E+ GKWR+R  MAGF   P+S ++  ++++ L      +  + ++E +G +  GWM R L    AW+
Sbjct:  315 PGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLL---RNYSDKYRLEERDGALYLGWMHRDLVASCAWK 490          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 91/181 (50.28%), Postives = 123/181 (67.96%), Query Frame = -2
Query:  145 CEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 684
            C+P ETL VNFAF+L  MPDESV+T N RDELL  VK L+P +VT+VEQ+ NTNT+PF  R  EA  YY A+F+S++ T+ R+  +R+ VE + L+R + N VACEG +R+ER E  GKWRARM MAGF  KPMS  +  +++  +    +    + +KEE G + F W  ++L V SAWR
Sbjct:  415 CKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIK--QQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 593          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 89/178 (50.00%), Postives = 118/178 (66.29%), Query Frame = -2
Query:  148 PDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAW 678
            P E LAVNF  +L  +PDESVST N RD LLR VK LSP V+TLVE E+NTNTAPF  R  E   YY A+F+SI+ T+ RD  +R+ +E+  L+R++ N +ACEG +R ER E FGKW+AR+ MAGF   P+S ++  ++RT L S    +  + + E +G +  GW  R L V SAW
Sbjct:  369 PGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLSSLVNATIRTLLQS---YSDNYKLAERDGALYLGWKSRPLVVSSAW 543          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.140e-43
Identity = 86/177 (48.59%), Postives = 120/177 (67.80%), Query Frame = -2
Query:  145 ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 672
            E L VNFA+ L  +PDESVS EN RD LLR VK LSP VVTLVEQE NTNT+PF+ R  E  +YY A+F+SI+  + R+H +R+ +E+  ++R + N +ACEG +R+ER E+ GKW++R  MAGFE  P+S II+ ++R  L      + G+ ++E +G +  GWM R L    AW+
Sbjct:  240 EALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRD---YSNGYAIEERDGALYLGWMDRILVSSCAWK 413          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.867e-42
Identity = 84/178 (47.19%), Postives = 117/178 (65.73%), Query Frame = -2
Query:  148 PDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAW 678
            P E L+VNF  +L   PDESV   NPRD LLR VKGLSP V TLVEQE++TNT PF+ R  E   YY A+F+SI++ + RD+ +R+ VE+  L++ + N +ACEG+DRVER E+ GKW++R+ MAGF   P+S  +   +R  L+     +  +T+ E++G +  GW  R L   SAW
Sbjct:  396 PGEALSVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLAC---YSDKYTLDEKDGAMLLGWRSRKLISASAW 570          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.416e-39
Identity = 86/177 (48.59%), Postives = 116/177 (65.54%), Query Frame = -2
Query:  145 ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 672
            E LAVNF   L  MPDESV+ EN RD LLR VK LSP+VVTLVEQE NTNTAPF+ R  E   +Y A+F+SI+  + RDH +R+ VE+  L+R++ N +ACEG +R ER E  GKWR+R  MAGF+  P+S  +  +++  L S    +  +T++E +G +  GW  + L    AWR
Sbjct:  424 EALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLES---YSEKYTLEERDGALYLGWKNQPLITSCAWR 597          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 75/176 (42.61%), Postives = 97/176 (55.11%), Query Frame = -2
Query:  145 ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 672
            ETL VN  F+L R+   S S E    +LL  VK + PS+VT+VEQE N N   F+ R NEA  YY +LFDS+E +      DRV  E  L R++ N VA EG DRVER E   +WR RM+ AGF+   +    A    + L S      G+ V+E +G +  GW  R L   SAW+
Sbjct:  375 ETLVVNSVFELHRLLARSGSIE----KLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGS-SAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWK 545          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.222e-26
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = -2
Query:  334 EPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEVFG 681
            EP   + VNF + L  MPDESVS EN RD LL  +K LSP +VTLVEQE+NTNT+PF++R  E   YY A+F+SI++   RD   R+  E+  ++R + N +ACE  +RVER EV G
Sbjct:  166 EPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLG 282          
BLAST of CX675602 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 68/179 (37.99%), Postives = 100/179 (55.87%), Query Frame = -2
Query:  148 PDETLAVNFAFKLFRMPDESVSTEN-PRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVE-EGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAW 678
            P+E LAVN   +L  + DE+ S EN PRD +L+ ++ ++P V        + N   F++R  EA  +Y ALFD  +ST+ RD+ +R++ E E   R+  N +ACE  DRVER E + +W+ RM  AGF+ K +   + E  R +L    R +  F V E +  +  GW GRTL   S W
Sbjct:  450 PNEVLAVNAGLRLKNLQDETGSEENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKW-RYHKDFVVDENSKWLLQGWKGRTLYASSCW 627          
The following BLAST results are available for this feature:
BLAST of CX675602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SCL8_ARATH4.213e-7675.56Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
PAT1_ARATH1.909e-4451.96Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
SCL1_ARATH9.473e-4450.28Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
CIGR2_ORYSJ4.702e-4350.00Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL21_ARATH6.140e-4348.59Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
CIGR1_ORYSJ8.867e-4247.19Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL5_ARATH1.416e-3948.59Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
RGL2_ARATH4.272e-2842.61DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
SCL13_ARATH5.222e-2651.28Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
SCL34_ARATH6.821e-2637.99Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63D07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63D07-G13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675602 ID=CX675602; Name=CX675602; organism=Citrus sinensis; type=EST; length=685bp
TTTTTACAAAACGCTACTCCTTTATTATTATTTCCTTTAGTGGGCCTCTT
TTTTTTCTTTCCCTTTCCATTTTCTCAGGAAAACGTTCGAAAATATAATA
ACAATTAATAATATTAAATTAAAAAGAGAGAGAGAGTGAATTCAACGCCA
GGCAGATACGACGGTGAGAGTTCGACCCATCCAGCCAAAGCAAATGCCGC
CGTTTTCTTCTTTGACGGTGAACCCCGGGTTCACTCGGTTCCCGGAACTC
AGTCGAGTCCGCATTGACTCGGCAATGATTTGACTCATTGGCTTCAACTC
GAACCCAGCCATCCTCATGCGGGCTCGCCACTTGCCAAACACCTCGCATC
TCTCCACACGGTCCCTGCCTTCACAAGCAACCGAGTTAGCCAATTTACGA
CTCAGCCCTTCCTCGACTTTGACTCGGTCCGAGTGGTCTCTCAGCACGGT
CGACTCGATCGAGTCAAACAACGCTCCGTAATATGCACACGCCTCGTTGA
CGCGCGCCATGAACGGCGCCGTATTTGTGTTCGTTTCTTGCTCCACCAAC
GTTACCACACTCGGTGACAACCCCTTTACACGCCGGAGCAGCTCGTCCCT
CGGATTCTCCGTTGACACGCTCTCGTCCGGCATTCGAAATAGCTTGAAAG
CGAAATTCACAGCTAGTGTTTCATCCGGCTCGCAA
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