CK939061

Overview
NameCK939061
Unique NameCK939061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_NOSP7 (Nitrogen regulatory protein P-II OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glnB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.043e-29
Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            KVEAI+RP+++ +V  AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV  +QV+ V+DKI+  ARTGEIGDGKIF+ PV  VIR+RTGE+  +A
Sbjct:    3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKVEIVVDDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_FREDI (Nitrogen regulatory protein P-II OS=Fremyella diplosiphon GN=glnB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.668e-29
Identity = 64/110 (58.18%), Postives = 88/110 (80.00%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            KVEAI+RP+++ +V  AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV  +QV+ V+DKI+  ARTGEIGDGKIF+ PV  V+R+RTGE+  +A
Sbjct:    3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKVEIVVEDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVVRIRTGEKNTEA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_SYNY3 (Nitrogen regulatory protein P-II OS=Synechocystis sp. (strain PCC 6803) GN=glnB PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.551e-29
Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            KVEAI+RP+++ +V  AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV + QV+ V+DK++  ARTGEIGDGKIF+ PV  V+R+RTGE+  +A
Sbjct:    3 KVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKIEIVVDEGQVDMVVDKLVSAARTGEIGDGKIFISPVDSVVRIRTGEKDTEA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_SYNP6 (Nitrogen regulatory protein P-II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glnB PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.729e-28
Identity = 64/110 (58.18%), Postives = 85/110 (77.27%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            K+EAI+RP+++ +V  AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV   QV+ VIDKI+  ARTGEIGDGKIF+ PV   IR+RTGE+   A
Sbjct:    3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_SYNE7 (Nitrogen regulatory protein P-II OS=Synechococcus elongatus (strain PCC 7942) GN=glnB PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.729e-28
Identity = 64/110 (58.18%), Postives = 85/110 (77.27%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            K+EAI+RP+++ +V  AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV   QV+ VIDKI+  ARTGEIGDGKIF+ PV   IR+RTGE+   A
Sbjct:    3 KIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_AQUAE (Nitrogen regulatory protein P-II OS=Aquifex aeolicus GN=glnB PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.582e-28
Identity = 58/110 (52.73%), Postives = 88/110 (80.00%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            K+EAI++P+++ +V  AL+ +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+E+VV  + VE V++ I++ A+TG +GDGKIF++PV DVIR+RTGERGE+A
Sbjct:    3 KIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVID-FLPKVKIEVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRIRTGERGEQA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_PASMU (Nitrogen regulatory protein P-II OS=Pasteurella multocida GN=glnB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 59/110 (53.64%), Postives = 83/110 (75.45%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            K+EAI++P+++  V  +L ++GI G+TV++VRGFG Q G TE + G+E+  D F+ KVKMEIVV+ +QV+  I+ IME A+TG+IGDGKIF+  V  VIR+RTGE  E A
Sbjct:    3 KIEAIIKPFKLDDVRESLSDVGITGMTVTEVRGFGRQKGHTELYRGAEYMVD-FLPKVKMEIVVTDEQVDQCIEAIMETAQTGKIGDGKIFVYDVERVIRIRTGEENEDA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_AZOBR (Nitrogen regulatory protein P-II OS=Azospirillum brasilense GN=glnB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.584e-24
Identity = 53/110 (48.18%), Postives = 80/110 (72.73%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            K+EAI++P+++ +V  AL  +GI+G+TV++ +GFG Q G TE + G+E+  D F+ KVK+E+V+    VE  I+ I + A TG IGDGKIF+ PV +V+R+RTGE+G  A
Sbjct:    3 KIEAIIKPFKLDEVKEALHEVGIKGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKIEVVMEDSLVERAIEAIQQAAHTGRIGDGKIFVTPVEEVVRIRTGEKGGDA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: Y059_METJA (Uncharacterized nitrogen regulatory PII-like protein MJ0059 OS=Methanocaldococcus jannaschii GN=MJ0059 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 58/110 (52.73%), Postives = 79/110 (71.82%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            KVEAI+RP +++ V  AL + G  G+TVS+V+G G QGG  ER+ G E+  D  + KVK+E+VV ++ V+ VID I E ARTG  GDGKIF++PV  V+RVRT E G++A
Sbjct:    3 KVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKIELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEGKEA 111
[Close]
BLAST of CK939061 vs. ExPASy Swiss-Prot
Match: GLNB_RHILO (Nitrogen regulatory protein P-II OS=Rhizobium loti GN=glnB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 52/110 (47.27%), Postives = 80/110 (72.73%), Query Frame = 2 
Query:  212 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 541
            K+EAI++P+++ +V  AL   G++G+TV++ +GFG Q G TE + G+E+  D F+ KVK+E+V+  D VEG I+ I + A+TG IGDGKIF+  + +V+R+RTGE G  A
Sbjct:    3 KIEAIIKPFKLDEVKEALQEAGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKIEVVLGDDAVEGAIEAIRKAAQTGRIGDGKIFVSNIEEVVRIRTGETGMDA 111
The following BLAST results are available for this feature:
BLAST of CK939061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GLNB_NOSP72.043e-2959.09Nitrogen regulatory protein P-II OS=Nostoc punctif... [more]
GLNB_FREDI2.668e-2958.18Nitrogen regulatory protein P-II OS=Fremyella dipl... [more]
GLNB_SYNY34.551e-2957.27Nitrogen regulatory protein P-II OS=Synechocystis ... [more]
GLNB_SYNP61.729e-2858.18Nitrogen regulatory protein P-II OS=Synechococcus ... [more]
GLNB_SYNE71.729e-2858.18Nitrogen regulatory protein P-II OS=Synechococcus ... [more]
GLNB_AQUAE8.582e-2852.73Nitrogen regulatory protein P-II OS=Aquifex aeolic... [more]
GLNB_PASMU1.789e-2553.64Nitrogen regulatory protein P-II OS=Pasteurella mu... [more]
GLNB_AZOBR2.584e-2448.18Nitrogen regulatory protein P-II OS=Azospirillum b... [more]
Y059_METJA7.518e-2452.73Uncharacterized nitrogen regulatory PII-like prote... [more]
GLNB_RHILO9.819e-2447.27Nitrogen regulatory protein P-II OS=Rhizobium loti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004434_G05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939061 ID=CK939061; Name=CK939061; organism=Citrus sinensis; type=EST; length=752bp
GGGAATGGCTGCAATTGCAAACCCAGCCTCGTTTACTCCGCTCAACTTCT
CTTCTCATCTCAAAGAACTTCCTCTTGTAAATTTCGGCTCCGTGCGGCCA
AGTTTGAGAATTTCTCGACTTTCTAGGCTCAAATGCACAAGAAATGTATC
AAATCTTCATGTTATCAGAGCCCAGAGCTCACCTGATTATATTCCTGATT
CTAAGTTTTACAAAGTGGAAGCCATTCTCAGGCCCTGGAGAGTCCAGCAG
GTTTCTTCGGCTTTGCTGAATATGGGTATCCGTGGTGTCACGGTTTCTGA
TGTTCGAGGTTTTGGTGCTCAAGGTGGCTCAACAGAAAGGCATGGTGGCT
CTGAATTTTCTGAGGATAAATTTGTTGCTAAAGTGAAGATGGAGATTGTG
GTGAGCAAAGACCAGGTGGAAGGAGTAATTGATAAAATTATGGAGGAGGC
AAGGACTGGAGAAATTGGTGACGGCAAGATTTTTTTGGTACCTGTCTCAG
ATGTCATAAGAGTTCGAACTGGTGAACGAGGTGAAAAAGCTGAAAGGATG
GCAGGAGGATGGTCGGACATATCTTCAGCTGTGTGACCTTGTACTGATTT
GTCGTATGATTTGAAAGCAAGATTAACATCAAAACCTCTTAGGTTTTAGA
AGTTTATGTTGCAATTATTCTGTACCGCATGTGCTTGATAAAAAAACAAG
AATAAAAAACTGGCATTGGTCTTAAAAAAAAAAAAAAAAAAANNNAAAAA
AA
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