CK939058

Overview
NameCK939058
Unique NameCK939058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939058 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTY (UPF0047 protein yjbQ OS=Salmonella typhimurium GN=yjbQ PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.389e-32
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 3
Query:  213 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDARDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 629
            W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D   R D E    K VP+  +A ++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIWL EHR    PRK++ TL G
Sbjct:    2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137          
BLAST of CK939058 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTI (UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.389e-32
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 3
Query:  213 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDARDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 629
            W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D   R D E    K VP+  +A ++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIWL EHR    PRK++ TL G
Sbjct:    2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137          
BLAST of CK939058 vs. ExPASy Swiss-Prot
Match: YJBQ_ECOLI (UPF0047 protein yjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 68/139 (48.92%), Postives = 90/139 (64.75%), Query Frame = 3
Query:  213 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDARDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 629
            W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D   R D E F  + VP+  +  ++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIWL EHR     R+++ TL G
Sbjct:    2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGN--YEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137          
BLAST of CK939058 vs. ExPASy Swiss-Prot
Match: YJBQ_ECO57 (UPF0047 protein yjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 68/139 (48.92%), Postives = 90/139 (64.75%), Query Frame = 3
Query:  213 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDARDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 629
            W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D   R D E F  + VP+  +  ++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIWL EHR     R+++ TL G
Sbjct:    2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVRHDMERFFLRTVPDNGN--YEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137          
BLAST of CK939058 vs. ExPASy Swiss-Prot
Match: YE72_SCHPO (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe GN=SPAC4A8.02c PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.884e-31
Identity = 68/138 (49.28%), Postives = 96/138 (69.57%), Query Frame = 3
Query:  219 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDARDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 632
            Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D    L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ I L E R  P  R +V T+ G+
Sbjct:    5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRADMNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLAEFRRQPHSRTIVCTIIGL 139          
BLAST of CK939058 vs. ExPASy Swiss-Prot
Match: Y1880_SYNY3 (UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803) GN=sll1880 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 57/141 (40.43%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  210 RWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDARDDTETFLNKIVPE-GRSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 629
            R  Q+ + +    +  H    KI   +    S  K GL  +F+ HTSASL I EN D D   D   F  ++VPE GR   ++H+ EG DDMPAHI+S++   +  IPI +G+L +GTWQG++L EHR  P  R+V++ ++G
Sbjct:    9 RQHQEILVIATQGKSLHNFNSKIQAVVQH--SGVKTGLCTVFVRHTSASLIIQENADPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLGTWQGVFLWEHRQRPHQREVIVHVSG 145          
BLAST of CK939058 vs. ExPASy Swiss-Prot
Match: Y1081_METJA (UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii GN=MJ1081 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  264 ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDARDDTETFLNKIVPEGRSAPWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 629
            ITP I+  I++  S+ K G+A +++ HT+A +TINEN D   + D   FL+ ++P+     W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQGI+  E  D P  R+  + + G
Sbjct:   23 ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPKN----WNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEF-DGPRRREFYVKIIG 136          
BLAST of CK939058 vs. ExPASy Swiss-Prot
Match: YUGU_BACSU (UPF0047 protein yugU OS=Bacillus subtilis GN=yugU PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 3
Query:  276 IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDARDDTETFLNKIVPEGRSAPWKHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 629
            I +E+   L E     G A ++  HT+A +TINEN D D + D     +++ P      W+H L+     +  AH+KSS  G +  + + +G+L +GTWQGI+ CE  D P  R   I + G
Sbjct:   18 ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------WEHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEF-DGPRTRTCYIKMMG 132          
The following BLAST results are available for this feature:
BLAST of CK939058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YJBQ_SALTY2.389e-3251.08UPF0047 protein yjbQ OS=Salmonella typhimurium GN=... [more]
YJBQ_SALTI2.389e-3251.08UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ P... [more]
YJBQ_ECOLI1.549e-3148.92UPF0047 protein yjbQ OS=Escherichia coli (strain K... [more]
YJBQ_ECO571.549e-3148.92UPF0047 protein yjbQ OS=Escherichia coli O157:H7 G... [more]
YE72_SCHPO5.884e-3149.28UPF0047 protein C4A8.02c OS=Schizosaccharomyces po... [more]
Y1880_SYNY37.210e-2140.43UPF0047 protein sll1880 OS=Synechocystis sp. (stra... [more]
Y1081_METJA1.407e-1642.28UPF0047 protein MJ1081 OS=Methanocaldococcus janna... [more]
YUGU_BACSU3.965e-1134.43UPF0047 protein yugU OS=Bacillus subtilis GN=yugU ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004434_G01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939058 ID=CK939058; Name=CK939058; organism=Citrus sinensis; type=EST; length=850bp
GGGGGGAGAGAGAAAAGTGTCAAAATATGCAATTGCAATTGCGAAGCAGC
TCCTCGGCCTCCGCTTTGTTTTCAGCCGTACAGGTGAAGCCACCGTCATC
GCCACCGGTTCGTGTAAAAGCCCTGTTCACAAAAAATCCGGGCTCGGGCA
CCCTAAAAAATTCCAATTCCAATACCAATCCCAATCCCAATCCCATGGCT
TCTAATCCTAGGTGGGCACAGAAGACTGTAACTCTCCCTCCACTTCGCCG
TGGCTGTCATCTCATTACCCCTAAGATAGTGAAGGAAATCGCGCAAGACT
TGTCAGAATTCAAGTGTGGCCTTGCGCATCTCTTTTTGCTGCACACAAGT
GCCTCTCTTACTATTAATGAGAATTATGACTCTGATGCTCGGGATGACAC
CGAGACTTTCCTCAACAAAATAGTCCCAGAGGGGAGATCAGCTCCTTGGA
AGCATACCCTCGAAGGCCCAGATGACATGCCAGCACATATTAAATCATCA
ATGTTTGGTTGCACACTCACGATTCCAATCACAGATGGGCAGCTAAACAT
GGGAACTTGGCAGGGAATATGGCTGTGCGAGCATCGCGATGCACCCACTC
CTCGCAAAGTCGTCATCACTCTCAATGGAATATGATTCAAATAGGAGATG
AGTGCTTTTGTTCTGTTACTTTTCTCCTTTTGACTGAAATGGTTAATGGC
GTGTAATGAATGAATGTAAACATAGCAAGAAAGAAGTGTCTATGTTGTTG
TTGGGATGATGTATGCAGTGAGGTACATAATTTCCTTAATGTATGTAATA
AACCCAATCCACCCTTCTTGATATGTATTGCCTTAAGGGTTGTATCAAAA
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