CK939057

Overview
NameCK939057
Unique NameCK939057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 1.081e-88
Identity = 166/232 (71.55%), Postives = 180/232 (77.59%), Query Frame = 1
Query:   64 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H               FYPADDVK+PL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+                            DDQK+VD  L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.248e-85
Identity = 161/233 (69.10%), Postives = 176/233 (75.54%), Query Frame = 1
Query:   61 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            M  KQ  P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVK+PL N+R  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                             DDQK+VD  LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.615e-84
Identity = 157/226 (69.47%), Postives = 175/226 (77.43%), Query Frame = 1
Query:   82 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVK+PLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K                             +DQK+VD  LIK+IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:    8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 2.332e-83
Identity = 159/233 (68.24%), Postives = 174/233 (74.68%), Query Frame = 1
Query:   61 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            M  KQ   +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVK+PL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K                             DDQK+VD  LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 1.096e-40
Identity = 107/262 (40.84%), Postives = 140/262 (53.44%), Query Frame = 1
Query:   70 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV   L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:   34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.431e-40
Identity = 111/264 (42.05%), Postives = 138/264 (52.27%), Query Frame = 1
Query:   67 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            PK+ KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV   L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   D YF K+                             DQK+VD  ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:   44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.431e-40
Identity = 110/273 (40.29%), Postives = 143/273 (52.38%), Query Frame = 1
Query:   37 AQQKRVASMAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            A++  V +   K+G+P  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV   L++  K KP      KLRASITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+                             DQK+VD+ ++  I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:   27 AKKANVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKV-DQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.441e-40
Identity = 107/263 (40.68%), Postives = 139/263 (52.85%), Query Frame = 1
Query:   67 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            PK+GKP  SRNP L+RGIG++SRS MY ++ ++  K                           KNGG                    +YP +DV   L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+                             DQK+VD+ ++  I+A+P L+ YL + F+L  G+ PH+LVF
Sbjct:   37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKI-DQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.441e-40
Identity = 107/262 (40.84%), Postives = 140/262 (53.44%), Query Frame = 1
Query:   70 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV   L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL + F+L  G+ PH++VF
Sbjct:   37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEITEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287          
BLAST of CK939057 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 164.081 bits (414), Expect = 9.276e-40
Identity = 114/288 (39.58%), Postives = 147/288 (51.04%), Query Frame = 1
Query:    1 GGRSHTKLSFTEAQQKRVASMAPK--QGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKEPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDTPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 759
            GG +    +      K+ +S A K  + KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV   L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+                             DQK+VD+ ++  I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:   22 GGDATAPRALPAGAVKKSSSKAKKLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
The following BLAST results are available for this feature:
BLAST of CK939057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR1.081e-8871.5560S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH7.248e-8569.1060S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL61_ARATH1.615e-8469.4760S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL62_ARATH2.332e-8368.2460S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_PIG1.096e-4040.8460S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_MOUSE1.431e-4042.0560S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_CHILA1.431e-4040.2960S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_HUMAN2.441e-4040.6860S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
RL6_BOVIN2.441e-4040.8460S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_RAT9.276e-4039.5860S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004434_H10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939057 ID=CK939057; Name=CK939057; organism=Citrus sinensis; type=EST; length=860bp
GGGGGACGCTCGCACACGAAACTCTCATTCACGGAGGCACAGCAGAAGCG
GGTAGCATCAATGGCGCCGAAGCAAGGGAAGCCAAGAGTGAGCAGGAATC
CGGAGCTGATCCGAGGAATTGGAAAGTTCTCTCGTTCAAAGATGTACCAT
AAGAGGGGTCTGTGGGCAATTAAAGCCAAAAACGGTGGCGTCTTTCCTCG
TCACGACCCTAAGCCCAAAGCCGCTGCTCCCGCCGAGAAGCCCCCCAAGT
TTTACCCCGCCGATGACGTCAAGGAACCACTCGTCAACAAGCGCAAGCCT
AAACCCACCAAGCTTAGAGCAAGCATCACCCCAGGGACAGTGCTGATTAT
ACTAGCTGGAAGGTTCAAGGGTAAGAGAGTTGTGTTCCTGAAGCAGCTTC
CATCTGGGTTGCTTCTAGTTTCTGGGCCATTTAAGATCAATGGTGTTCCT
TTACGACGTGTGAACCAGTCTTACGTGATTGGAACTTCTACCAAAGTTGA
TATCTCCGGAGTGAATGTGGATAAGTTTGATGATAAGTATTTTGCCAAGG
AAGTCGAGAGGAAGAAGAAGAAAGGAGAGAATGAGTTCTTTGAGTCAGAG
AAAGAGGAGAAGAAGTCGCTTCCTCAGGAGAAGAAGGATGATCAGAAGTC
CGTTGATACACCATTGATCAAGGCCATTGAGGCTGTTCCAGACTTGAAGG
CTTACCTTGGTGCTAGGTTTTCCCTCAGGGCCGGCATGAAACCTCATGAA
CTTGTCTTCTGAAAACATGTTGAAACAATTTAGGATTGCTTTGCTTTTTC
CTACTTGTTATGTTTTGTCTGAAATTTATTTTACCAGTTGTAATCTTTGT
TTCATGGGAT
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