CK939042

Overview
NameCK939042
Unique NameCK939042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939042 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.011e-36
Identity = 90/212 (42.45%), Postives = 119/212 (56.13%), Query Frame = 2
Query:  299 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQXXXXXXXXXXXX-----------------SGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTV 883
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A FG+R+L       P  GQ                             +G               PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS RTV
Sbjct:   89 ANLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTV 299          
BLAST of CK939042 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.011e-36
Identity = 90/212 (42.45%), Postives = 119/212 (56.13%), Query Frame = 2
Query:  299 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQXXXXXXXXXXXX-----------------SGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTV 883
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A FG+R+L       P  GQ                             +G               PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS RTV
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTV 299          
BLAST of CK939042 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.011e-36
Identity = 91/213 (42.72%), Postives = 120/213 (56.34%), Query Frame = 2
Query:  299 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQXXXXXXXXXXXX------------------SGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTV 883
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +TVL+A FG+R+L       P  GQ                              +G               PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS RTV
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG-YATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTV 300          
BLAST of CK939042 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.287e-31
Identity = 81/188 (43.09%), Postives = 110/188 (58.51%), Query Frame = 2
Query:  320 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQXXXXXXXXXXXXSGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTV 883
            AF A   +I VSE+GD+TF IA ++AMR+P+  VL G +  L  MT+LS  +G+I   L +R + N A   L+  FG +LL+ A      +              SG+ K             I +ESF LTF+AEWGDR+QIATIALA   NA GV+ GA +GHTIC  +AV+GG  +A +IS++TV
Sbjct:    4 AFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTR-YINYAEVALFLIFGTKLLWDA-RRIKATANLEEMEDAEKAIASGEKKLKIVPRGWG----IVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTV 185          
BLAST of CK939042 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.257e-28
Identity = 79/218 (36.24%), Postives = 110/218 (50.46%), Query Frame = 2
Query:  320 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAW--MSDPKSGQXXXXXXXXXXXXSG----------------------------QGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTV 883
            + I S SMI   EIGD+TFI+AAL+A  + + TV +G+ SALF+MT+L   LG   P L  RK T+    VL+  FG+++L  A   M   +S              +G                            Q K            P+F+++F LTF++EWGDRSQIATIA+A   N  GV +GA +GH  CT+LAV+ G  +++KI    V
Sbjct:   49 SLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKV 266          
BLAST of CK939042 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = 2
Query:  320 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF-------GLRLLYIAWMSDP---------------------KSGQXXXXXXXXXXXXSGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTV 883
            +F+ S SMI +SEIGD+TF+IAALMAMRH +  V S A ++L +MT+LS  +G      +S ++T   A +L+  F       GL +   A + +                      K G               +              P++++ F++ FL E GDRSQI+ IA+AT  +   V  GA IGH IC+ LAVVGG +LA++IS RT+
Sbjct:   41 SFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTI 256          
The following BLAST results are available for this feature:
BLAST of CK939042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TM165_RAT1.011e-3642.45Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE1.011e-3642.45Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
TM165_HUMAN1.011e-3642.72Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
Y615_SYNY38.287e-3143.09UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YD68_SCHPO2.257e-2836.24UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
YB37_YEAST3.372e-2434.72UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004434_H11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IIIF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939042 ID=CK939042; Name=CK939042; organism=Citrus sinensis; type=EST; length=888bp
GGGGACTGCAGAGATCTTGGCGCTTCGGCGAGGTCTCTCTCTTTCTCTCT
CGCAGATCTGTTTGTTTCCCTTCAGTTCTTTCTAAATTTACGACATGGGT
TTGGTTTCAAACCCCGTCCGCTTTCTCTTCGTCGCCCTTTCCATCTTCTC
CGCTCTTTCTGCCATCTCTGCTCAGGACACCCTTTTCGAATCCGATAATG
AAGACCCATCTCGATCTGCTAAAGATCTCGGCCGCCGTGGCTTGATTTTA
TCGCAAGACCTTGAGAATGAACTCGGTACGATCCCTTTGAATATCGACTC
GGGTCTTGGAGTTTTTGATGCCTTCATCGCAAGTTTTTCGATGATCATTG
TTAGTGAGATTGGAGATGAGACTTTTATAATAGCAGCACTTATGGCAATG
CGTCATCCCAAGTCAACCGTTTTGTCGGGTGCGCTCTCTGCTCTGTTTGT
TATGACTGTGCTTTCTACTGGACTAGGTAGGATTGTGCCGAATTTGATAT
CAAGGAAGCATACGAATAGTGCTGCTACAGTTCTGTATGCATTTTTTGGG
CTGCGGTTACTATACATAGCTTGGATGTCAGATCCAAAATCGGGTCAGAA
GAAAGAAATGGAGGAGGTGGAGGAGAAACTTGAGTCAGGGCAAGGGAAGA
CAACCTTCCGCCGTTTCTTCTCAAGATTCTGTACTCCCATATTTCTAGAG
TCATTTATTTTGACATTCCTGGCAGAGTGGGGAGATCGTAGCCAGATAGC
CACAATTGCTTTGGCAACACACAAAAATGCCGTTGGAGTTGCAGTTGGGG
CCACAATAGGACACACAATCTGTACATCACTGGCCGTGGTGGGTGGGAGC
ATGCTGGCGTCAAAGATTTCGCAACGTACGGTTGCTAC
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