CX675596

Overview
NameCX675596
Unique NameCX675596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675596 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 7.738e-75
Identity = 130/186 (69.89%), Postives = 162/186 (87.10%), Query Frame = 3
Query:    3 DLFELDSAEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSKKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 560
            DL+ELD AEVL+P+ GNWR +++M  +MASYD AVL+GKLLVTEGWLWPFFVSPRGQVYDP TD WE+M++GLREGWTG+SVV+Y+ LF+VSELERMK+KVYDP TDSWETI GP LPEQIC+PFAVN    RVYVVGRNLH+AVG+I +   S+ K  F+V+W+VV++P+ ++D+TPS+SQ+LFA
Sbjct:  218 DLYELDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPFAVNCYGNRVYVVGRNLHLAVGNIWQ---SENK--FAVRWEVVESPERYADITPSNSQILFA 398          
BLAST of CX675596 vs. ExPASy Swiss-Prot
Match: AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 69/178 (38.76%), Postives = 102/178 (57.30%), Query Frame = 3
Query:   27 EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLP-EQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSKKKWSFSVQWQVVDAPDNFSDLTPSSSQVLF 557
            E  DP    W  +  +   +A YD+AV+  ++ VTEGW WPF   P GQVYD     W  M+ G++EGWTG SVV+ + LFV+SE     +KVY    D+W  + G  L  E++ +PFAV   D RV+VV   ++VA G +    +  +   FSV+W++V +P +    +P+S  VL+
Sbjct:  198 ESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQVYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPFAVTGADDRVFVVASGINVAEGRV----SEGQNGDFSVEWRMVSSPKSSIQFSPASCHVLY 371          
BLAST of CX675596 vs. ExPASy Swiss-Prot
Match: FBK8_ARATH (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 50/138 (36.23%), Postives = 66/138 (47.83%), Query Frame = 3
Query:    6 LFELDSAEVLDPVKGNWRTIASMGTNMASY--DAAVLD-------------GKLLVTEG-WLWPFFVSPRGQVYDPSTDNWESMAVGLREGW------TGSSVVVYEHLFVV---SELERMKLKVYDPSTDSWETIEG 344
            L  L SAEV DP    W  + SM  + A    +A + D             G+L V +  + WPFFV   G+VYDP T+ W  M  G+ EGW      T  SVVV   L+     S +E  K+KVYD   D+W+ + G
Sbjct:  243 LSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIG 380          
The following BLAST results are available for this feature:
BLAST of CX675596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FBK17_ARATH7.738e-7569.89F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
AFR_ARATH3.289e-3338.76F-box protein AFR OS=Arabidopsis thaliana GN=AFR P... [more]
FBK8_ARATH4.180e-1236.23F-box/kelch-repeat protein At1g22040 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63D04-G7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675596 ID=CX675596; Name=CX675596; organism=Citrus sinensis; type=EST; length=677bp
CAGACCTTTTCGAGCTTGACTCAGCTGAGGTTTTGGATCCTGTAAAGGGA
AATTGGCGCACCATTGCAAGCATGGGAACAAACATGGCATCTTATGATGC
TGCAGTTCTAGATGGCAAACTTCTTGTGACGGAAGGCTGGTTGTGGCCAT
TTTTTGTCTCTCCGAGAGGTCAGGTCTATGATCCGAGTACTGATAATTGG
GAAAGCATGGCTGTTGGACTGAGAGAAGGGTGGACTGGTTCAAGTGTTGT
GGTTTATGAGCATTTGTTTGTGGTTTCAGAGCTTGAAAGAATGAAGCTCA
AAGTTTATGACCCAAGCACTGATTCGTGGGAGACAATAGAGGGGCCTCCG
CTACCAGAGCAGATATGCAAACCCTTTGCCGTAAATGCATGTGATTGCAG
AGTCTATGTTGTGGGTCGGAATCTGCATGTTGCTGTGGGTCATATCACAA
GGCTGAGCACCTCTAAGAAAAAGTGGAGCTTCAGTGTACAATGGCAAGTT
GTTGATGCTCCAGATAATTTTTCTGACTTGACACCCTCAAGCTCTCAGGT
TCTGTTTGCTTAGTTCTCCAAATAATCTGATCTCATGTTTTCTGTGTTGT
TGAATAAGTTGTAATCAAATAAATTTATTAGCTCTGTGTTATTAGAATGA
ATGTATTGTCTAAAAAAAAAAAAAAAA
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