CX675595

Overview
NameCX675595
Unique NameCX675595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675595 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.683e-75
Identity = 131/187 (70.05%), Postives = 162/187 (86.63%), Query Frame = -3
Query:  119 ADLFELDSGEVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLPEQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLFA 679
            ADL+ELD  EVL+P+ GNWR +++M  +MASYD AVL+GKLLVTEGWLWPFFVSPRGQVYDP TD WE+M++GLREGWTG+SVV+Y+ LF+VSELERMK+KVYDP TDSWETI GP LPEQIC+PFAVN    RVYVVGRNLH+AVG+I +   SE K  F+V+W+VV++P+ ++D+TPS+SQ+LFA
Sbjct:  217 ADLYELDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQICRPFAVNCYGNRVYVVGRNLHLAVGNIWQ---SENK--FAVRWEVVESPERYADITPSNSQILFA 398          
BLAST of CX675595 vs. ExPASy Swiss-Prot
Match: AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.541e-33
Identity = 69/178 (38.76%), Postives = 102/178 (57.30%), Query Frame = -3
Query:  122 EVLDPVKGNWRTIASMGTNMASYDAAVLDGKLLVTEGWLWPFFVSPRGQVYDPSTDNWESMAVGLREGWTGSSVVVYEHLFVVSELERMKLKVYDPSTDSWETIEGPPLP-EQICKPFAVNACDCRVYVVGRNLHVAVGHITRLSTSEKKWSFSVQWQVVDAPDNFSDLTPSSSQVLF 652
            E  DP    W  +  +   +A YD+AV+  ++ VTEGW WPF   P GQVYD     W  M+ G++EGWTG SVV+ + LFV+SE     +KVY    D+W  + G  L  E++ +PFAV   D RV+VV   ++VA G ++     +    FSV+W++V +P +    +P+S  VL+
Sbjct:  198 ESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQVYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPFAVTGADDRVFVVASGINVAEGRVSEGQNGD----FSVEWRMVSSPKSSIQFSPASCHVLY 371          
BLAST of CX675595 vs. ExPASy Swiss-Prot
Match: FBK8_ARATH (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 49/138 (35.51%), Postives = 65/138 (47.10%), Query Frame = -3
Query:  335 LFELDSGEVLDPVKGNWRTIASMGTNMASY--DAAVLD-------------GKLLVTEG-WLWPFFVSPRGQVYDPSTDNWESMAVGLREGW------TGSSVVVYEHLFVV---SELERMKLKVYDPSTDSWETIEG 673
            L  L S EV DP    W  + SM  + A    +A + D             G+L V +  + WPFFV   G+VYDP T+ W  M  G+ EGW      T  SVVV   L+     S +E  K+KVYD   D+W+ + G
Sbjct:  243 LSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIG 380          
The following BLAST results are available for this feature:
BLAST of CX675595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FBK17_ARATH2.683e-7570.05F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
AFR_ARATH2.541e-3338.76F-box protein AFR OS=Arabidopsis thaliana GN=AFR P... [more]
FBK8_ARATH1.227e-1135.51F-box/kelch-repeat protein At1g22040 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63D04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63D04-G7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675595 ID=CX675595; Name=CX675595; organism=Citrus sinensis; type=EST; length=681bp
TTTTTTTTTTTTTTTTTAGACAATACATTCATTCTAATAACACAGAGCTA
ATAAATTTATTTGATTACAACTTATTCAACAACACAGAAAACATGAGATC
AGATTATTTGGAGAACTAAGCAAACAGAACCTGAGAGCTTGAGGGTGTCA
AGTCAGAAAAATTATCTGGAGCATCAACAACTTGCCATTGTACACTGAAG
CTCCACTTTTTCTCAGAGGTGCTCAGCCTTGTGATATGACCCACAGCAAC
ATGCAGATTCCGACCCACAACATAGACTCTGCAATCACATGCATTTACGG
CAAAGGGTTTGCATATCTGCTCTGGTAGCGGAGGCCCCTCTATTGTCTCC
CACGAATCAGTGCTTGGGTCATAAACTTTGAGCTTCATTCTTTCAAGCTC
TGAAACCACAAACAAATGCTCATAAACCACAACACTTGAACCAGTCCACC
CTTCTCTCAGTCCAACAGCCATGCTTTCCCAATTATCAGTACTCGGATCA
TAGACCTGACCTCTCGGAGAGACAAAAAATGGCCACAACCAGCCTTCCGT
CACAAGAAGTTTGCCATCTAGAACTGCAGCATCATAAGATGCCATGTTTG
TTCCCATGCTTGCAATGGTGCGCCAATTTCCCTTTACAGGATCCAAAACC
TCACCTGAGTCAAGCTCGAAGAGGTCTGCCT
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