CX675594

Overview
NameCX675594
Unique NameCX675594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2481 contig Csv1_Contig2481:259..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMEDA_DICDI (Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 49/139 (35.25%), Postives = 78/139 (56.12%), Query Frame = 1
Query:   13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            IDFT+ SP   +V++ +  S      ++  +G+Y FCF+N  S  T +TVSF + VG       +AK + L PI   I  L + + +V +EQ Y + R+  HR+T EST  R+L +++ E  +L   S  Q+ Y+R+ F
Sbjct:   61 IDFTIISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESSPIREIAKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWSVFEAFVLIALSIWQIYYLRRFF 199          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED2_RAT (Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  Q+ Y+++ F
Sbjct:   57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 195          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED2_MOUSE (Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  Q+ Y+++ F
Sbjct:   57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 195          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED2_HUMAN (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  Q+ Y+++ F
Sbjct:   57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 195          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED2_CRIGR (Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  Q+ Y+++ F
Sbjct:   52 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 190          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED_NEMVE (Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.968e-14
Identity = 38/139 (27.34%), Postives = 75/139 (53.96%), Query Frame = 1
Query:   13 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            ID  +  P   V+++ +  +  K+ F A   G Y +CF+N  ST  P+ + F + +G  P + +   +   D ++  +++L EA+  V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  QV Y+++ F
Sbjct:   59 IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAPKDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESLVLVAMTLGQVYYLKRFF 197          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMEDB_DICDI (Transmembrane emp24 domain-containing protein B OS=Dictyostelium discoideum GN=empB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.474e-14
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   13 IDFTVTSPAGNVV----HTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 423
            I+  +T P GN +    H      G K  F A  SG YK CFNN  S  T + V+F            +AK + + P++  + ++   L+SV+ EQK LR R+  +R T+EST  R++ +TI E ++L +    Q+ Y+RK F
Sbjct:   61 INVKLTDPKGNTIFERLHFDTQMKG-KQSFTAGESGAYKVCFNNEMSRFTAKVVTF-TWASEEEGVKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWF 201          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED3_MOUSE (Transmembrane emp24 domain-containing protein 3 OS=Mus musculus GN=Tmed3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = 1
Query:    4 HPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGH----IPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNR 447
            H  +D  V  P GNV++       D F +K    G+Y+FCF+N +ST   +TV F   VG     +P+  N  +   L  +      + EAL++V+  Q + R R+ + R   E    R+  +++GE + L + S  QVL ++  F++    NR
Sbjct:   66 HYDVDCYVEDPRGNVIYRETKKQYDSFTYKTEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGN--RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRPVNR 217          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED7_HUMAN (Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 1
Query:    4 HPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGH----IPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFS 426
            H  +D  +  P G V++       D F F A ++G YKFCF+N +S  T +TV F   VG      P+E+ ++    ++   V I    EAL+SV+  Q + R R+ + R   E    R+  +++GE ++L + S  QV  ++  FS
Sbjct:   70 HYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVSI---HEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFS 213          
BLAST of CX675594 vs. ExPASy Swiss-Prot
Match: TMED3_RAT (Transmembrane emp24 domain-containing protein 3 OS=Rattus norvegicus GN=Tmed3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.087e-12
Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 1
Query:    4 HPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGH----IPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNR 447
            H  +D  V  P GN+++       D F +K    G+Y+FCF+N +ST   +TV F   VG     +P+  N  +   L  +      + EAL++V+  Q + R R+ + R   E    R+  +++GE + L + S  QVL ++  F++    NR
Sbjct:   66 HYDVDCYVEDPMGNIIYRETKKQYDSFTYKTEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGN--RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRPINR 217          
The following BLAST results are available for this feature:
BLAST of CX675594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TMEDA_DICDI2.815e-1735.25Transmembrane emp24 domain-containing protein A OS... [more]
TMED2_RAT3.441e-1530.94Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_MOUSE3.441e-1530.94Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_HUMAN3.441e-1530.94Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_CRIGR3.441e-1530.94Transmembrane emp24 domain-containing protein 2 (F... [more]
TMED_NEMVE4.968e-1427.34Transmembrane emp24 domain-containing protein OS=N... [more]
TMEDB_DICDI8.474e-1434.27Transmembrane emp24 domain-containing protein B OS... [more]
TMED3_MOUSE9.370e-1329.87Transmembrane emp24 domain-containing protein 3 OS... [more]
TMED7_HUMAN1.224e-1231.29Transmembrane emp24 domain-containing protein 7 OS... [more]
TMED3_RAT2.087e-1229.22Transmembrane emp24 domain-containing protein 3 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63D02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63D02-G3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675594 ID=CX675594; Name=CX675594; organism=Citrus sinensis; type=EST; length=623bp
GATCACCCCGGCATTGATTTCACTGTGACATCTCCTGCTGGAAATGTTGT
ACACACTGTTAAGGGGACATCTGGAGACAAGTTTGAATTTAAGGCTCCAC
GAAGTGGGATGTACAAGTTCTGTTTTAATAATCCATATTCTACACCAGAA
ACAGTCTCTTTCTATATTCATGTGGGCCATATTCCCAATGAGCATAACCT
CGCCAAAGATGAACATCTAGACCCAATTAATGTGAAAATTGCTGAGTTGA
GGGAGGCATTGGAGTCTGTCGTGTCAGAGCAGAAGTACTTGAGAGCACGT
GATACTCGACATCGTCATACAAATGAGAGCACAAGAAAGCGTCTTTTAGG
CTACACAATTGGAGAATATGTTCTGCTGGCCATGGCAAGTGCCCTTCAAG
TGTTGTATATCCGCAAGCTCTTTAGCAAGTCAGTTGCATACAACCGGGTT
TGAAGCACCATATAGTTATTTGTCTGTTTAATTAACAAGAGGATGAATGT
TAAAGTTCAGGAAAATGTGTGAATTCTGCGGAAACTACACCCTGCGTTGG
TTTATATTATTCATTTCCAGCACTTCACAATAGATTTGAATTTTGAACGT
GNAANANAAAAAAAAAAAAAAAA
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