CX675593

Overview
NameCX675593
Unique NameCX675593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_ORYSJ (60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.292e-82
Identity = 151/178 (84.83%), Postives = 164/178 (92.13%), Query Frame = -1
Query:  238 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQXXXXXXXXXXXXXXAQRLT 771
            DKNLA++LFK+LLKYRPED+AAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ+KAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGK+RLGSIVHKKTASVLCLTTVKNEDK+EFSKILEAIKANFNDK++E+RKKWGGG+MGSKSQ              AQR+T
Sbjct:   81 DKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRMT 258          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.312e-79
Identity = 144/159 (90.57%), Postives = 155/159 (97.48%), Query Frame = -1
Query:  295 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 771
            DKNLA+SLFK+LLKYRPED+AAKKERL+K+AQAEAEGK  E+KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGKSRLG++VH+KTAS LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:   80 DKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 238          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.713e-79
Identity = 143/159 (89.94%), Postives = 154/159 (96.86%), Query Frame = -1
Query:  295 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 771
            DKNLA+SLFK+LLKYRPED+AAKKERLL +AQAEAEGK  E+KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGKSRLG++VH+KTA+ LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:   79 DKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 237          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.047e-52
Identity = 105/159 (66.04%), Postives = 124/159 (77.99%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKK-PIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            DK  A  LFKLL KYRPE   AKK RL K A+A+A+GK VE KK P  V  G N VT LIEQ KAQLVVIAHDVDP+ELV++LPALCRKM +PYCIVKGK+RLG +V +KT + L LTTV N DK  F K+LEA+K NFN+++EE+R+ WGGGI+GSKS
Sbjct:   93 DKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKS 251          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL8_SCHPO (60S ribosomal protein L8 OS=Schizosaccharomyces pombe GN=rpl8 PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 5.744e-51
Identity = 99/161 (61.49%), Postives = 127/161 (78.88%), Query Frame = -1
Query:  295 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 771
            DKN A+ +FKLL KYRPE  A KK+RL+  A+A A GK+ +  +KKP  VKYGLNHV  LIE  KA+LV+IA DVDPIELVV+LPALC+KM +PY IVK K+RLG+++H+KTA+VL +T V+ EDK E + I+ A+ ANF+ KY+E R+KWGGGIMG K+Q
Sbjct:   83 DKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQ 243          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_ICTPU (60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 8.294e-50
Identity = 96/159 (60.38%), Postives = 121/159 (76.10%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D+  A+ LFKL  KYRPE +  KK RLL RA+ +A GK  V  K+P VV+ G+N VT L+E  KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG +VH+KT + +C T    ED+   +K++EAIK N+ND+YEE+R+ WGG IMG KS
Sbjct:   88 DRQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDVPTKRPPVVRAGVNTVTSLVESKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKS 246          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL8A_YEAST (60S ribosomal protein L8-A OS=Saccharomyces cerevisiae GN=RPL8A PE=1 SV=4)

HSP 1 Score: 193.741 bits (491), Expect = 9.170e-49
Identity = 96/161 (59.63%), Postives = 125/161 (77.64%), Query Frame = -1
Query:  295 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 771
            D+N A+  FKL  KYRPE  A KKERL K A A AEGK+ +  + KP  VKYGLNHV  LIE  KA+LV+IA+DVDPIELVV+LPALC+KM +PY IVKGK+RLG++V++KT++V  LT V+ ED+   +K++  I ANF DKY+E++K WGGGI+G+K+Q
Sbjct:   83 DRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQ 243          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_TAKRU (60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.198e-48
Identity = 93/159 (58.49%), Postives = 121/159 (76.10%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D+  A+ LFKL  KYRPE +  KK+RLL RA+ +A GK     K+P V++ G+N +T L+E  KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG +VH+KT + +  T    EDK   +K++EAIK N+ND+YEE+R+ WGGGI+G KS
Sbjct:   88 DRQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDAPTKRPPVLRAGVNTITSLVENKKAQLVVIAHDVDPIELVIFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVAFTQTNPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILGPKS 246          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL8B_YEAST (60S ribosomal protein L8-B OS=Saccharomyces cerevisiae GN=RPL8B PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.564e-48
Identity = 95/161 (59.01%), Postives = 125/161 (77.64%), Query Frame = -1
Query:  295 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 771
            D+N A+  FKL  KYRPE  A KKERL K A A AEGK+ +  + KP  VKYGLNHV  LIE  KA+LV+IA+DVDPIELVV+LPALC+KM +PY I+KGK+RLG++V++KT++V  LT V+ ED+   +K++  I ANF DKY+E++K WGGGI+G+K+Q
Sbjct:   83 DRNTAAETFKLFNKYRPETAAEKKERLTKEAAAIAEGKSKQDASPKPYAVKYGLNHVVSLIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIIKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQ 243          
BLAST of CX675593 vs. ExPASy Swiss-Prot
Match: RL7A_BOVIN (60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 2.043e-48
Identity = 91/159 (57.23%), Postives = 122/159 (76.73%), Query Frame = -1
Query:  298 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 771
            D+  A+ L KL  KYRPE +  KK+RLL RA+ +A GK  V  K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:   88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
The following BLAST results are available for this feature:
BLAST of CX675593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL7A_ORYSJ6.292e-8284.8360S ribosomal protein L7a OS=Oryza sativa subsp. j... [more]
RL7A1_ARATH1.312e-7990.5760S ribosomal protein L7a-1 OS=Arabidopsis thalian... [more]
RL7A2_ARATH1.713e-7989.9460S ribosomal protein L7a-2 OS=Arabidopsis thalian... [more]
RL7A_DROME1.047e-5266.0460S ribosomal protein L7a OS=Drosophila melanogast... [more]
RL8_SCHPO5.744e-5161.4960S ribosomal protein L8 OS=Schizosaccharomyces po... [more]
RL7A_ICTPU8.294e-5060.3860S ribosomal protein L7a OS=Ictalurus punctatus G... [more]
RL8A_YEAST9.170e-4959.6360S ribosomal protein L8-A OS=Saccharomyces cerevi... [more]
RL7A_TAKRU1.198e-4858.4960S ribosomal protein L7a OS=Takifugu rubripes GN=... [more]
RL8B_YEAST1.564e-4859.0160S ribosomal protein L8-B OS=Saccharomyces cerevi... [more]
RL7A_BOVIN2.043e-4857.2360S ribosomal protein L7a OS=Bos taurus GN=RPL7A P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63D01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63D01-G1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675593 ID=CX675593; Name=CX675593; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTAAGATCACACAAAATCTATATAGGAATGTGGACTTGCAATA
CGTTCCTCATATCAAAAAGGCACATACTAATGGTGCAAACATATAACAGT
TCAGAAGTTCAATTAAAAATCTTAATAAGGTAAAATGCTAAGAGACTACA
TAGAAACATGTTCATTAAAATAAAAAGATGATGAAAGCACAAGAAATAAC
AAAACATTGGACTCTCTTAAGACTGAGCAAAATCCTAGGTCAGCCTCTGA
GCAGCTTCCTTAGCAAGAAGTTTCTCCTTGGCCTTGGTTTTTGCCTGTGA
TTTGGAGCCCATAATACCACCTCCCCACTTCTTTCTTAACTCCTCGTACT
TGTCGTTGAAGTTAGCCTTGATGGCCTCAAGGATCTTGCTGAATTCCATC
TTATCCTCATTCTTAACTGTTGTCAAACACAATACAGAAGCCGTCTTCTT
GTGGACAATCGATCCCAAACGTGATTTTCCTTTGACAATGCAGTATGGGA
TCTCCATCTTCCTGCACAAGGCAGGAAGCCAGACAACCAACTCAATCGGG
TCAACATCATGAGCAATGACAACCAATTGTGCCTTGTTCTGTTCAATGAG
GTATGTCACATGGTTCAAGCCATATTTCACAACAATAGGCTTCTTAGCCT
CCACAGTCTTCCCTTCAGCCTCAGCCTGAGCTCTCTTCAAAAGACGTTCC
TTCTTAGCAGCTCTATCCTCAGGCCTGTACTTGAGGAGCAACTTGAAAAG
ACTTGAGGCAAGATTCTTGTC
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