CK939005
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1) HSP 1 Score: 395.586 bits (1015), Expect = 1.690e-109 Identity = 198/253 (78.26%), Postives = 222/253 (87.75%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR KYEAH CK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA IE F++KKE CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+V ESSLP A+ DDEP +VGPDDIAAVAS+WSGIPVQQITADERMLL+ LE+QL+ RV+GQDEAVAAISRAVKRSRVGLKDP+RP AAMLFCGPTGVGKTEL K+LAA YFGSE SMLRLDMSEYMERHTVSKLIGSPPGYVG G Sbjct: 466 GLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRARIEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEESSLPPAAGDDEPILVGPDDIAAVASVWSGIPVQQITADERMLLMSLEDQLRGRVVGQDEAVAAISRAVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEYMERHTVSKLIGSPPGYVGFEEG 718
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.312e-61 Identity = 136/258 (52.71%), Postives = 173/258 (67.05%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA---HIELFKRKKE--QQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR +YE H ++T EA+ AA LS +YISDR+LPDKAIDLVDEAGSR H +L + KE ++ + K ++Y +R E R K D+ A + E E S DE +V DI + S W+GIPV +++ADE L+ +E+ L KR+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG G Sbjct: 445 GLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEAKELDKEVRKIVKEKEEY---VRNQD--FEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 697
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 3.482e-61 Identity = 128/257 (49.81%), Postives = 171/257 (66.54%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY-----DDVVASMGDTSEIVV---ESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVG 750 GLR +YE H ++T E++ AA LS +YISDR+LPD+AIDL+DEAGSR + + +E + + +E+R + +E V+G + D + + S I E S + DE +V DI + S W+GI V++++ DE LL+ +EE L KRVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFG E +M+RLDMSE+MERHTVSKLIGSPPGYVG Sbjct: 394 GLRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEAR---------ELEKELRQITKENEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVG 641 HSP 2 Score: 26.1794 bits (56), Expect = 3.482e-61 Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 2 Query: 734 PQVMLGYEEGGLLTEAIRRQPF 799 P +GY E LTEA+RR+P+ Sbjct: 636 PPGYVGYTEPPQLTEAVRRRPY 657
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.094e-59 Identity = 129/263 (49.05%), Postives = 172/263 (65.40%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKY-----DDVVASMGDTSEIVVESSLPSASDDDEPAVVGP----DDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR +YE H +T EAI AA LS +YISDR+LPDKAIDL+DEAGSR + + +E + + +E+R + + +E V+G + D + S ++ ++ S ++ + GP DI + S W+GIPV++++ DE L+ +EE L RVIGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAKSLA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG G Sbjct: 447 GLRERYEIHHKLHYTDEAIEAAAKLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAR---------ELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 700
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 7.958e-59 Identity = 131/265 (49.43%), Postives = 173/265 (65.28%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA---HIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGS--------RLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR +YE H ++T E + AA LS +YISDR+LPDKAIDL+DEAGSR H +L + KE + +E+R + + +E V+G R + D+ A + + E S + D +V DI + S W+GIPV++++ DE L+ +EE L R+IGQDEAV AISRA++R+RVGLK+PNRP A+ +F GPTGVGK+ELAK+LAA YFGSE +M+RLDMSE+MERHTVSKLIGSPPGYVG G Sbjct: 445 GLRERYEIHHKLRYTDEDLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELE------------KELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG 697
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.149e-57 Identity = 128/265 (48.30%), Postives = 174/265 (65.66%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYW-QEIRTVQAM-HEVVQGSRLKYDDVVASMGDTSEIVVESSLPS-------ASDDD---EPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR +YEAH K + AI AA LS +YI+DR+LPDKAIDLVDEA SR + +K P +Y +E+R +Q + +E+++ D AS EI V+ + + A +++ P +V DDIA + S W+GIPV ++T E L+ +EE L R++GQ+EAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTEL K++A+ +FGSE +M+RLDMSEYMERHTVSKLIGSPPGYVG G Sbjct: 383 GLRDRYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKLP----------PSAEYLDEELRHIQKIKNELIRSG----DFEEASQFREREIEVKVQMAALMKAKKEAIEEELALNPPIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEG 633
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.560e-57 Identity = 128/260 (49.23%), Postives = 166/260 (63.85%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR +YE H + A+ AA + +YISDR+LPDKAIDL+DEAGSR + L + L K E+R V + E ++ KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL K+LA+ +FGSE+SM+RLDMSEYMERHTVSKLIGSPPGYVG G Sbjct: 355 GLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSR--VRLLNSQLPPAARELDK-------ELRAVLKTKDEAIRAQ--KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEG 603
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 3.344e-57 Identity = 128/260 (49.23%), Postives = 166/260 (63.85%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV-QAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR +YE H + A+ AA + +YISDR+LPDKAIDL+DEAGSR + L + L K E+R V + E ++ KY+ EI + + + S +EP VV DDIA + + W+GIPV ++T E L+ +EE L R+IGQDEAV A+SRA++R+RVGLK+PNRP A+ +F GPTGVGKTEL K+LA+ +FGSE+SM+RLDMSEYMERHTVSKLIGSPPGYVG G Sbjct: 355 GLRDRYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSR--VRLLNSQLPPAARELDK-------ELRAVLKTKDEAIRAQ--KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEG 603
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 6.306e-56 Identity = 122/260 (46.92%), Postives = 159/260 (61.15%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKEQQTCILSKPPDD--YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR +YEAH T +AI AAV LS RYISDR+LPDKAIDL+DEAGS+ + F ++ EQ+ + K D QE ++ + Q R + +D S + E + V DDIA V S W+G+PV +I E L+ +E L RVIGQDEAV A+++AV+R+R GLKDP RP + +F GPTGVGKTELA++LA FG E SM+R+DMSEYME+H+ S+L+GSPPGYVG G Sbjct: 353 GLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE-------------KQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEG 599
BLAST of CK939005 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 1.405e-55 Identity = 118/253 (46.64%), Postives = 161/253 (63.64%), Query Frame = 1 Query: 4 GLRXKYEAHXXCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLKKRVIGQDEAVAAISRAVKRSRVGLKDPNRPTAAMLFCGPTGVGKTELAKSLAACYFGSESSMLRLDMSEYMERHTVSKLIGSPPGYVGV*RG 762 GLR +YE H + EA++AA + +YI+DR+LPDKAIDL+DEAGSR + L + L K + ++ + +L+ D + + S + E +VV +DIA + + W+GIPV ++T E L+ +EE L R+IGQDEAV A+S+A++R+RVGLK+PNRP A+ +F GPTGVGKTEL K+LA+ +FGSE +M+RLDMSEYMERHTVSKLIGSPPGYVG G Sbjct: 352 GLRDRYEKHHKLVISDEALSAAAKFADQYIADRFLPDKAIDLIDEAGSR--VRLMNSQLPPAARELDKELREILKQKDEAVRSQDFETAGQLR--DREMEIKAQIAAIAHSKKGDEENTKEVSVVTEEDIAQIVAAWTGIPVNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEG 600 The following BLAST results are available for this feature:
BLAST of CK939005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939005 ID=CK939005; Name=CK939005; organism=Citrus sinensis; type=EST; length=799bpback to top |