CK939002

Overview
NameCK939002
Unique NameCK939002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_MOUSE (Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Tinp1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.774e-52
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KRMVTK  FVG GFTRKPPKYERFIRP GLRF KAHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGKYAQVTNNPENDGCINAVLLV
Sbjct:  147 KRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV 260
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_HUMAN (Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=TINP1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.774e-52
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KRMVTK  FVG GFTRKPPKYERFIRP GLRF KAHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGKYAQVTNNPENDGCINAVLLV
Sbjct:  147 KRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV 260
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_BOVIN (Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=TINP1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.774e-52
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KRMVTK  FVG GFTRKPPKYERFIRP GLRF KAHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGKYAQVTNNPENDGCINAVLLV
Sbjct:  147 KRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV 260
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_RAT (Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Tinp1 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 2.866e-51
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            +RMVTK  FVG GFTRKPPKYE+FIRP GLRF KAHVTHPELK TF L I+GVKKNP+ P+YT+LGVITKGT+IEVNVSELGLVT  GKV+WGKYAQVTNNPENDGCINAVLLV
Sbjct:  147 RRMVTKVCFVGDGFTRKPPKYEKFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV 260
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_DICDI (Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.138e-50
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KR VTK TFVG GFTRKPPKYERFIRP+GLRF KAHVTHPELK TF L+I+ VKKNP  P YT LGVITKGTI+EVNVS+LGLVT  GKVVWGK AQVTNNPENDGCINAVLLV
Sbjct:  147 KRFVTKVTFVGEGFTRKPPKYERFIRPTGLRFKKAHVTHPELKSTFYLDILSVKKNPQSPTYTQLGVITKGTILEVNVSDLGLVTQTGKVVWGKMAQVTNNPENDGCINAVLLV 260
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_USTMA (Ribosome biogenesis protein NSA2 OS=Ustilago maydis GN=NSA2 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.405e-50
Identity = 92/114 (80.70%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KRMVTK TFVG  FTRKPPK ERFIRP GLR+ KAHVTHPELK +FNL I+GVKKNP  P+YT LGV+TKGTIIEVNVSELG+ T  GKVVWGKYAQVTNNPENDGC+NAVLL+
Sbjct:  158 KRMVTKPTFVGESFTRKPPKLERFIRPMGLRYNKAHVTHPELKASFNLPIVGVKKNPQSPLYTQLGVLTKGTIIEVNVSELGMTTTTGKVVWGKYAQVTNNPENDGCVNAVLLL 271
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_CRYNE (Ribosome biogenesis protein NSA2 OS=Cryptococcus neoformans GN=NSA2 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.331e-48
Identity = 92/114 (80.70%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KRMV KATFVG GFTRKP K ERFIRP GLR TKA+VTHPELK TF L I+GVKKNP  P+YTSLGV+TKGTI+EVNVSELG+VT  GKVVW KYAQ+TNNPENDGCIN+VLLV
Sbjct:  141 KRMVNKATFVGEGFTRKPVKLERFIRPMGLRMTKANVTHPELKTTFQLPILGVKKNPQSPLYTSLGVLTKGTILEVNVSELGMVTTGGKVVWSKYAQITNNPENDGCINSVLLV 254
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_PHANO (Ribosome biogenesis protein NSA2 OS=Phaeosphaeria nodorum GN=NSA2 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.966e-48
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KRM+TK TFVGPGFTR+P KYERFIRP GLR+ KA+VTHPEL  T  L II VKKNP  P+YT LGV+TKGTIIEVNVSELGLVT  GKVVWG+YAQ+TNNPENDGC+NAVLLV
Sbjct:  148 KRMITKPTFVGPGFTRRPVKYERFIRPMGLRYKKANVTHPELSVTVQLPIISVKKNPQNPLYTQLGVLTKGTIIEVNVSELGLVTAGGKVVWGRYAQITNNPENDGCLNAVLLV 261
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_BOTFB (Ribosome biogenesis protein nsa2 OS=Botryotinia fuckeliana (strain B05.10) GN=nsa2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.776e-46
Identity = 86/114 (75.44%), Postives = 98/114 (85.96%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KRM+TK TFVGP FTR+P KYERFIRP GLR+ KA+VTHPEL  T  L II VKKNP  PMYT LGV+T+GTI+EVNVS+LGLVT  GKVVWG++AQ+TNNPENDGC+NAVLLV
Sbjct:  142 KRMITKPTFVGPDFTRRPVKYERFIRPMGLRYKKANVTHPELGVTVQLPIISVKKNPQNPMYTQLGVLTRGTIVEVNVSDLGLVTAGGKVVWGRWAQITNNPENDGCVNAVLLV 255
[Close]
BLAST of CK939002 vs. ExPASy Swiss-Prot
Match: NSA2_NEUCR (Ribosome biogenesis protein nsa-2 OS=Neurospora crassa GN=nsa-2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.799e-45
Identity = 83/114 (72.81%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:    6 KRMVTKATFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV 347
            KR+VTK TFVGP FTR+P KYERFIRP GLR+ KA+VTHP L  T  L I+GVKKNP+ P+YT LGV++KGTIIEVNVS+LG+VT +GK+ WG+YAQ+TNNPENDGC+NAVLLV
Sbjct:  148 KRVVTKPTFVGPDFTRRPVKYERFIRPMGLRYKKANVTHPTLNVTVQLPILGVKKNPSNPLYTQLGVLSKGTIIEVNVSDLGMVTASGKIAWGRYAQITNNPENDGCLNAVLLV 261
The following BLAST results are available for this feature:
BLAST of CK939002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
NSA2_MOUSE5.774e-5285.09Ribosome biogenesis protein NSA2 homolog OS=Mus mu... [more]
NSA2_HUMAN5.774e-5285.09Ribosome biogenesis protein NSA2 homolog OS=Homo s... [more]
NSA2_BOVIN5.774e-5285.09Ribosome biogenesis protein NSA2 homolog OS=Bos ta... [more]
NSA2_RAT2.866e-5183.33Ribosome biogenesis protein NSA2 homolog OS=Rattus... [more]
NSA2_DICDI4.138e-5083.33Ribosome biogenesis protein NSA2 homolog OS=Dictyo... [more]
NSA2_USTMA5.405e-5080.70Ribosome biogenesis protein NSA2 OS=Ustilago maydi... [more]
NSA2_CRYNE1.331e-4880.70Ribosome biogenesis protein NSA2 OS=Cryptococcus n... [more]
NSA2_PHANO2.966e-4878.95Ribosome biogenesis protein NSA2 OS=Phaeosphaeria ... [more]
NSA2_BOTFB2.776e-4675.44Ribosome biogenesis protein nsa2 OS=Botryotinia fu... [more]
NSA2_NEUCR1.799e-4572.81Ribosome biogenesis protein nsa-2 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_E02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939002 ID=CK939002; Name=CK939002; organism=Citrus sinensis; type=EST; length=609bp
GGGGGAAGAGGATGGTCACAAAGGCCACATTTGTTGGACCTGGTTTTACA
AGAAAACCTCCCAAGTATGAGAGGTTCATTCGTCCTTCGGGTTTGCGTTT
TACCAAAGCTCATGTAACTCACCCTGAACTTAAGTGCACCTTCAATCTTG
AGATCATTGGAGTGAAAAAGAATCCTAATGGTCCGATGTATACCTCTCTT
GGTGTTATTACTAAGGGGACGATCATTGAGGTGAATGTCAGTGAATTGGG
TCTGGTAACACCAGCTGGAAAAGTTGTGTGGGGAAAGTATGCACAAGTGA
CAAATAATCCAGAGAATGATGGTTGTATAAATGCCGTTCTACTTGTTTGA
GAGGATACTGATATCATTTTACATGCTTGTTGCGGAGTATTTAATGTTTT
AAGTTCTAACTTCTTGAGTTGTACGTGTATAAACCGGCTTCTCATGTGCA
ACTATTTTCTTAAGAGCCCTTTATTTTATGCTGTCTTGAGCATAGTGAGT
AGCCAGGTTTCGTTGTAACAGGCACCTGAATCCTGATGATGGGTGTTTCA
ATTTTGTTATAAAAAGTGGAACGTTTTGCCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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