CK938993

Overview
NameCK938993
Unique NameCK938993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.620e-67
Identity = 126/171 (73.68%), Postives = 142/171 (83.04%), Query Frame = 3
Query:   54 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD-------------DKSTEDDLKTWDADFVKVDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            MS+ +KITLKSSDGE FE++E VALESQTIKHM+EDDC D  IPLPNVTS ILSKVIEYCK+HVEA    +                 S+++DLKTWD++F+KVDQ TLFDLILAA+YLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.870e-65
Identity = 122/159 (76.73%), Postives = 138/159 (86.79%), Query Frame = 3
Query:   60 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDK---STEDDLKTWDADFVKVDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            S KKI LKSSDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+HVEA +   +  +   +++DDLK WDADF+K+DQ TLF+LILAA+YLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.639e-58
Identity = 112/160 (70.00%), Postives = 134/160 (83.75%), Query Frame = 3
Query:   60 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGS---GDKKDDKSTE-DDLKTWDADFVKVDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            ++K I LKSSDGE+FE+EE VA++SQTIKHM+EDDCAD  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    S E D+LK WD++FVKVDQ TLFDLILAA+YLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct:    4 TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.387e-57
Identity = 111/160 (69.38%), Postives = 132/160 (82.50%), Query Frame = 3
Query:   60 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGS---GDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            ++K I LKSSDGE+FEVEE VA+ESQTIKHM+EDDC D  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    STE+ +LKTWD DFVKVD  TLFDL+ AA+YLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct:    4 TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.032e-53
Identity = 104/156 (66.67%), Postives = 123/156 (78.85%), Query Frame = 3
Query:   60 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            S K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKKH        + +  +E+DL  WD  F+ ++Q+T+F+LILAA+YLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHV-----DEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.994e-52
Identity = 104/157 (66.24%), Postives = 123/157 (78.34%), Query Frame = 3
Query:   60 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            S K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK HV+  +        +E+DL  WD  F+ ++Q+T+F+LILAA+YLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEAN------PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.372e-49
Identity = 96/156 (61.54%), Postives = 122/156 (78.21%), Query Frame = 3
Query:   66 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKV--DQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            K + L SSDGE+F+VEE VA++SQTI HM+EDDC    +P+ NVT  ILSKVIEYCKKHV + S  ++    ++D+LK WDA+F+K     +TLFD++LAA+YLNIK LLDL CQTVADMI GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct:    3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEE----SKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.900e-47
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3
Query:   60 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            S  KI L SSDGE+FEVEE VA + + ++HM+EDDC  T +PL NVT  ILS V+EYCKKHV        D++S  D+ KTWD +F+K  DQ T+F L+LAA+YLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct:    2 SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVV-------DEES--DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.437e-47
Identity = 96/157 (61.15%), Postives = 114/157 (72.61%), Query Frame = 3
Query:   60 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 527
            S KKI LKSSDG +FEVEE  A + QTI HM EDDC D  IPLP VT  IL  VIEYC KH V+A +        +++DLK WD +F++  Q+T+FDLI+AA+YLNIK LLDL CQTVADMIK  T E  RK FNI+ND++ +EEE VRRENQW FE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKHHVDAAN------PCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CK938993 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.102e-46
Identity = 96/166 (57.83%), Postives = 120/166 (72.29%), Query Frame = 3
Query:   60 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGD--------KKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAASYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEE-VRRENQWAFE 527
            S  KI L SSDGE+F+VEE VA + Q +KH++EDDC    IPL NVT  ILS V+EYCKKHV+    D        KK D   + +L  WDA+F+K +D  T+F LILAA+YLN++GLL LTCQTVAD IK KTPEE+R+ FNI+NDF+ +EEEE +R+EN WAFE
Sbjct:    2 SSNKIVLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVDDVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
The following BLAST results are available for this feature:
BLAST of CK938993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1B_ARATH5.620e-6773.68SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH6.870e-6576.73SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH1.639e-5870.00SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH1.387e-5769.38SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH6.032e-5366.67SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH2.994e-5266.24SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH2.372e-4961.54SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH2.900e-4761.78SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH8.437e-4761.15SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK15_ARATH1.102e-4657.83SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_F01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938993 ID=CK938993; Name=CK938993; organism=Citrus sinensis; type=EST; length=761bp
GGGATCATTAGTTTCACAAATAGCTTTAGCGAAAACCGTAACTCTCAGAA
ACGATGTCGTCTGAGAAGAAGATCACTCTGAAGAGTTCGGACGGTGAGAC
GTTCGAGGTGGAGGAGACGGTGGCCCTCGAGTCGCAGACAATCAAGCACA
TGGTGGAGGACGACTGCGCCGACACCGTAATCCCGCTGCCGAATGTGACG
AGCACGATTCTCTCGAAGGTTATCGAGTACTGCAAGAAGCACGTTGAGGC
TGGGTCAGGGGACAAGAAGGACGACAAGTCGACCGAGGATGATCTCAAGA
CCTGGGATGCAGACTTCGTCAAGGTTGATCAGAATACCCTCTTTGACCTA
ATCTTGGCCGCCAGTTACCTGAACATTAAGGGTTTGCTGGACTTGACCTG
CCAAACTGTTGCAGACATGATCAAGGGGAAGACTCCAGAGGAGATCCGCA
AGACCTTCAACATCAAGAATGACTTCTCTCCCGATGAAGAAGAGGAGGTT
CGGAGAGAGAACCAATGGGCATTCGAGTGAAGGACTGAAGTGATGAAGGC
TCGGTAATTAATATTTGTGATAGGAATGTCGTTATAATGATAGTGGTCTT
TTAGTATGTTGCCAGTAGGTGTCTAGTATTGAACATCAACATTTCCTTTT
GTCGTGAACCTGTGAGTNNNGCTCGATATAAATGTCATTGAACCCTTGTC
TATTGCATTATATCTTCGTTTCTTGTCTCTCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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