CX675590
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.338e-49 Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 3 Query: 336 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 653 +P D P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA A +QLASL+L+ Sbjct: 527 VPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629 HSP 2 Score: 81.2629 bits (199), Expect = 3.338e-49 Identity = 43/88 (48.86%), Postives = 51/88 (57.95%), Query Frame = 2 Query: 44 GLGQQFLYGQAPPAIIP-QAGFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPIMPHQMPPRGHAWRY 304 G+GQQ YGQAPPA+IP Q G+GYQQQLVPGMRP G P+P+FF +QQ P+M QM PRG +RY Sbjct: 432 GIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFF--MPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRY 517
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 4.125e-22 Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 3 Query: 366 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 656 P+ I+ L++ LA ASP++ +LG+ LYPLVEQ E AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A + D +LS +E Sbjct: 572 PLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19 Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 3 Query: 369 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 593 +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR Sbjct: 570 LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16 Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 3 Query: 345 RDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 626 R +VGQP P T + AL+ A P+QQ+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V + +++ PA Sbjct: 617 RGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.536e-16 Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 3 Query: 330 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 614 AG P D QP +TA ALA ASPE+Q+ +LGE++YP V + + A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q + Sbjct: 547 AGRPEAD----QPGALTA--AALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16 Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 3 Query: 372 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 650 P+TA S LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA + + A SL Sbjct: 541 PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQSL 628
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15 Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 3 Query: 384 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 593 +++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+ Sbjct: 556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15 Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 3 Query: 372 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 626 P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A Sbjct: 544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15 Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 3 Query: 372 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 626 P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A Sbjct: 544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15 Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 3 Query: 372 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 626 P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A Sbjct: 544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626 The following BLAST results are available for this feature:
BLAST of CX675590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675590 ID=CX675590; Name=CX675590; organism=Citrus sinensis; type=EST; length=752bpback to top |