CX675590

Overview
NameCX675590
Unique NameCX675590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.338e-49
Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 3
Query:  336 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 653
            +P  D     P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA   A    +QLASL+L+
Sbjct:  527 VPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629          

HSP 2 Score: 81.2629 bits (199), Expect = 3.338e-49
Identity = 43/88 (48.86%), Postives = 51/88 (57.95%), Query Frame = 2
Query:   44 GLGQQFLYGQAPPAIIP-QAGFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPIMPHQMPPRGHAWRY 304
            G+GQQ  YGQAPPA+IP Q G+GYQQQLVPGMRP G P+P+FF                        +QQ  P+M  QM PRG  +RY
Sbjct:  432 GIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFF--MPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRY 517          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.125e-22
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  366 PMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 656
            P+ I+ L++ LA ASP++   +LG+ LYPLVEQ E   AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR  A   A +  D   +LS +E
Sbjct:  572 PLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 3
Query:  369 MPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 593
            +PI+ L+++LA+ASP  +  +LGE LYPLVE+ E    AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct:  570 LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  345 RDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 626
            R  +VGQP P T +      AL+ A P+QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V     + +++ PA
Sbjct:  617 RGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.536e-16
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  330 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 614
            AG P  D    QP  +TA   ALA ASPE+Q+ +LGE++YP V   + + A K+TGM+LE+  TE+LHLLE  EAL AKV EA+EVL+   Q  +
Sbjct:  547 AGRPEAD----QPGALTA--AALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  372 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 650
            P+TA S  LA+A P++Q+ +LGE LYPL+ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++    QA   + + A  SL
Sbjct:  541 PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQSL 628          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 3
Query:  384 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 593
            +++ LANA P++Q+ +LGE LYP++E +  + A K+TGMLLE++ +E+LH++E  EALKAKV EA+ VL+
Sbjct:  556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 3
Query:  372 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 626
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 3
Query:  372 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 626
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX675590 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 3
Query:  372 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 626
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
The following BLAST results are available for this feature:
BLAST of CX675590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PABP2_ARATH3.338e-4968.87Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH4.125e-2258.76Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH1.123e-1964.00Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_EMENI1.518e-1646.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA7.536e-1650.53Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR9.842e-1648.39Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_DROME2.864e-1551.43Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP1_RAT2.864e-1547.06Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE2.864e-1547.06Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_PONAB3.740e-1547.06Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63C12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63C12-E23-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675590 ID=CX675590; Name=CX675590; organism=Citrus sinensis; type=EST; length=752bp
CTCGGTTCCTCCTCGTATGCCAATGTACCCACCTGGCCCTTCAGGCCTAG
GGCAACAGTTTCTGTATGGCCAAGCACCACCAGCAATAATTCCTCAAGCT
GGATTTGGTTACCAGCAGCAACTTGTTCCTGGAATGAGGCCTGCTGGGGC
ACCGATGCCGAACTTCTTTGTTCCAGTGGTCTCGCAAGGTCAGCAGGGCC
AGCGTCCTGGTGGACGACGTGGTGCTGGACCTGTGCAACAGACCCAGCAG
CCACTCCCCATTATGCCGCACCAGATGCCTCCCAGGGGTCATGCCTGGCG
GTATGCTCCCTGTTCCCGTTGACATGGGCGCTGGCATACCTCGGCGAGAT
GCATCTGTTGGACAACCTATGCCGATAACGGCTTTGTCTACTGCTCTTGC
AAATGCATCACCAGAACAGCAAAGGACGCTGCTGGGTGAAAGTTTATATC
CTCTAGTGGAGCAGCTGGAGCGAGATGCAGCGGCTAAGGTAACGGGAATG
CTCTTGGAGATGGACCAGACAGAGGTTTTGCATCTTCTTGAGTCACCAGA
GGCTTTGAAGGCGAAAGTAGCTGAGGCAATGGAGGTTTTGAGGAGTGTTG
CTCAGCAGCAGGCTAATAATCCAGCAGATCAACTGGCTTCATTGTCCCTG
AATGAAAACCTTGTTTCTTGAGCGCGTTGCTGTCATTGAAGAAGTTTGGA
TTAGTTGTGGTTTCAAACAATTAAAGTCTTTGTTTTTGGCATGGATGGTG
TA
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