CK938988

Overview
NameCK938988
Unique NameCK938988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length376
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.520e-22
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   64 MSDTCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 261
            MSDTCGNCDC+D +QCVKKGSSY AD  ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   64 MSDTCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 258
            MSD CGNCDC+D SQCVKKG+S   D  ETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   73 TCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 264
            TCGNCDC D SQCVKKG+SY  D  ET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   64 MSDTCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 258
            MS  C NCDCSD SQC KKG S+     ET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.983e-15
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   64 MSDTCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 261
            MS  C NCDC+D +QCVKKG+SY     ET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   64 MSDTCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 261
            MSD CGNCDC+D SQCVKKG+SY     E + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   64 MSDTCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 261
            MSD CGNCDC+D SQCVKKG+SY     E + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   64 MSDTCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 261
            MSD CGNCDC+D SQCVKKG+SY     + + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK938988 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   64 MSDTCGNCDCSDWSQCVKKGSSYAADFGETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 261
            MSD CG+CDC+D SQCVKKG+SY     + + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK938988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.520e-2268.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE1.095e-1764.62Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC1.431e-1759.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV3.524e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.983e-1556.06Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.526e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.526e-1451.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.364e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI8.983e-1245.45Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004435_G08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938988 ID=CK938988; Name=CK938988; organism=Citrus sinensis; type=EST; length=376bp
GTTTCGTACAATAAATAGCCCTCTATTTCCAGTTTTAAATTCCAAGTTCT
AAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCTCTGACT
GGAGCCAGTGTGTGAAGAAAGGAAGCAGCTATGCTGCTGACTTCGGGGAG
ACGGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGC
TGAAACTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACT
GCACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAA
GCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAAAATAATGTAAGGGTGA
GCAAAAAAAAAAAAAAAAAAAAAAAA
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