CK938987

Overview
NameCK938987
Unique NameCK938987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.501e-60
Identity = 118/172 (68.60%), Postives = 131/172 (76.16%), Query Frame = 3
Query:   51 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHVEVP----TTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            MS+ + I LKS DGE+FE++EAVALES TIKHMIEDDC DNG PLPNVT KIL+KV+EYCK+HVE      TT D                +EDLK+WD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP         NQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSS-DEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.765e-59
Identity = 115/166 (69.28%), Postives = 126/166 (75.90%), Query Frame = 3
Query:   57 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            S K IVLKS DGESFEVEEAVALES TI HM+EDDC DNG PLPNVT KILAKV+EYCK+HVE   ++                 ++DLK+WD DF+K+DQATLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.678e-54
Identity = 105/164 (64.02%), Postives = 122/164 (74.39%), Query Frame = 3
Query:   63 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            KMI+LKS DGESFE+EEAVA++S TIKHMIEDDCADNG PLPNVTG ILAKV+EYCKKHVE                       ++LK+WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND+TP         N+WAFE
Sbjct:    6 KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAE------NDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.615e-53
Identity = 103/164 (62.80%), Postives = 117/164 (71.34%), Query Frame = 3
Query:   63 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            KMI+LKS DGESFEVEEAVA+ES TIKHMIEDDC DNG PLPNVTG ILAKV+EYCKKHVE                        +LK+WD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND+TP         N+WAFE
Sbjct:    6 KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAA------EAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.226e-50
Identity = 101/166 (60.84%), Postives = 115/166 (69.28%), Query Frame = 3
Query:   57 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +G PL NV  KIL KV+EYCKKH                        EEDL +WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKH---------------HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.779e-49
Identity = 101/167 (60.48%), Postives = 115/167 (68.86%), Query Frame = 3
Query:   57 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKK-HVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +G PL NV  KIL KV+EYCKK HV+                      EEDL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEANP----------------ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.473e-44
Identity = 94/168 (55.95%), Postives = 114/168 (67.86%), Query Frame = 3
Query:   63 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHV--EVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKV--DQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            KM++L S DGESF+VEEAVA++S TI HMIEDDC  NG P+ NVTG IL+KV+EYCKKHV  + PT +                 +++LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP         NQWAFE
Sbjct:    3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEES----------------KDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.379e-42
Identity = 90/166 (54.22%), Postives = 102/166 (61.45%), Query Frame = 3
Query:   57 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            S K I+LKS DG SFEVEE  A +  TI HM EDDC DNG PLP VTGKIL  V+EYC KH                        +EDLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND+T          NQW FE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH---------------HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.071e-42
Identity = 89/167 (53.29%), Postives = 106/167 (63.47%), Query Frame = 3
Query:   57 SPKMIVLKSCDGESFEVEEAVALE-STTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            S K I+LKS DG SFEVEE  A +    I HM E+DC DNG PLPNVTGKILA V+EYC KH                        ++DLK WD +F++ D +T+FDLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND TP         N+WAFE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH---------------HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CK938987 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.239e-42
Identity = 96/169 (56.80%), Postives = 110/169 (65.09%), Query Frame = 3
Query:   51 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGSPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 554
            MSS K IVL S DGESFEVEEAVA +   ++HMIEDDC     PL NVTGKIL+ VVEYCKKHV                        ++ K+WD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP         N WAFE
Sbjct:    1 MSSNK-IVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHV-------------------VDEESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
The following BLAST results are available for this feature:
BLAST of CK938987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1B_ARATH2.501e-6068.60SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH2.765e-5969.28SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH2.678e-5464.02SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH8.615e-5362.80SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH5.226e-5060.84SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH5.779e-4960.48SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH1.473e-4455.95SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH1.379e-4254.22SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH3.071e-4253.29SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK14_ARATH5.239e-4256.80SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004435_G07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IVF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938987 ID=CK938987; Name=CK938987; organism=Citrus sinensis; type=EST; length=599bp
GGGGAAGCGGAGGAGACAAAGCTAGATTTGTTTTCTTTTTTCTCGAAACG
ATGTCGTCTCCTAAGATGATCGTACTCAAGAGCTGTGACGGCGAGTCTTT
CGAGGTCGAGGAGGCTGTCGCGCTTGAGTCGACGACCATCAAGCACATGA
TCGAGGACGACTGCGCCGATAACGGCAGCCCGTTACCGAACGTGACGGGC
AAGATCCTGGCGAAGGTGGTTGAGTATTGCAAGAAACACGTGGAGGTTCC
TACGACCCAGGATAGCAACACCAGCGGCGCCAACAGCAACGGTGCTGCCA
CTAACGGTGGTGAGGAGGATCTCAAAAGCTGGGACACTGACTTCGTCAAA
GTTGACCAGGCCACTCTCTTCGATCTCATCCTGGCTGCAAACTACCTGAA
CATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGACATGATCA
AGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAGAATGAC
TTCACTCCAGAGGAGGAAGAAGAGGTCCGTAGGGAGAACCAGTGGGCTTT
TGAGTGAAAGTTGTTTCAACAAAGACAATTTGTCATTATCATTGTCTTG
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