CK938986
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_CITSI (DNA-directed RNA polymerase subunit beta OS=Citrus sinensis GN=rpoB PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 3.350e-51 Identity = 98/102 (96.08%), Postives = 98/102 (96.08%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGNAGMSTIPGLN IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPLLKERDAVYESFTYSSELYVS GLIWKSRGDMQEQTIFIG Sbjct: 1 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSAGLIWKSRGDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_TOBAC (DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum GN=rpoB PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47 Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SOLTU (DNA-directed RNA polymerase subunit beta OS=Solanum tuberosum GN=rpoB PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47 Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SOLLC (DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47 Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_SOLBU (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum GN=rpoB PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47 Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_NICSY (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris GN=rpoB PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47 Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_ATRBE (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna GN=rpoB PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.539e-47 Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_NICTO (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 2.484e-46 Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN G+STIPG N IQFEGFCRFI QGLTEELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQT FIG Sbjct: 1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTFFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_EUCGG (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus GN=rpoB PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 4.238e-46 Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN GMSTIPG N IQFEGFCRFI QGLTEEL KFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYES TYSSELYVS GLIWK+ DMQEQT+FIG Sbjct: 1 MLGDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELIKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYSSELYVSAGLIWKTSRDMQEQTLFIG 102
BLAST of CK938986 vs. ExPASy Swiss-Prot
Match: RPOB_COFAR (DNA-directed RNA polymerase subunit beta OS=Coffea arabica GN=rpoB PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 1.610e-45 Identity = 88/102 (86.27%), Postives = 91/102 (89.22%), Query Frame = -1 Query: 2 MLGDGNAGMSTIPGLNPIQFEGFCRFIHQGLTEELYKFPKIEDTDQETEFQLFVETYQLVEPLLKERDAVYESFTYSSELYVSPGLIWKSRGDMQEQTIFIG 307 MLGDGN GM+TIPG N IQFEGFCRFI QGL EELYKFPKIEDTDQE EFQLFVETYQLVEPL+KERDAVYE TYSSELYVS GLIWK+ DMQEQTIFIG Sbjct: 1 MLGDGNEGMATIPGFNQIQFEGFCRFIDQGLAEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYELLTYSSELYVSAGLIWKTGRDMQEQTIFIG 102 The following BLAST results are available for this feature:
BLAST of CK938986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 90
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Sequences
The
following sequences are available for this feature:
EST sequence >CK938986 ID=CK938986; Name=CK938986; organism=Citrus sinensis; type=EST; length=355bpback to top |