FC921799

Overview
NameFC921799
Unique NameFC921799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13855 contig Csv1_Contig13855:2..324. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.824e-24
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+I+LLT GAREASF N+KSIAECLAEELI+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  143 VRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.071e-23
Identity = 52/71 (73.24%), Postives = 67/71 (94.37%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+++L+TIGAREA+F N+KSI+ECLAEE+I+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  133 VRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.071e-23
Identity = 52/71 (73.24%), Postives = 67/71 (94.37%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+++L+TIGAREA+F N+KSI+ECLAEE+I+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  133 VRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.287e-22
Identity = 52/71 (73.24%), Postives = 65/71 (91.55%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ +SPLRRVNQ+I LLT GAREA+F NIKSIAECLA+ELI+A KGSS+SYAI++KDE+ERVA+++R
Sbjct:  127 VRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 7.323e-22
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 3
Query:    6 RRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            RR A+ VSPLRRVNQ+I+LLTIGAREA+F NIK+IAE LAEELI+A KGSS SYAI++KDELERVA+S+R
Sbjct:  156 RRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.323e-22
Identity = 51/71 (71.83%), Postives = 65/71 (91.55%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ +SPLRRVNQ+I LLT GAREA+F NIK+IAECLA+ELI+A KGSS+SYAI++KDE+ERVA+++R
Sbjct:  137 VRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.564e-22
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ V+PLRRVNQ+I LL  GAREASF NIKSIAECLA+ELI+A +GSS+SYAI++KDELERVA+S+R
Sbjct:  140 VRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.564e-22
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+I LL  GAREA+F NIK+IAECLA+ELI+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 9.564e-22
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+I LL  GAREA+F NIK+IAECLA+ELI+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of FC921799 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.564e-22
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 3
Query:    3 VRRPALHVSPLRRVNQSISLLTIGAREASFPNIKSIAECLAEELIHAPKGSSHSYAIQEKDELERVAQSHR 215
            VRR A+ VSPLRRVNQ+I LL  GAREA+F NIK+IAECLA+ELI+A KGSS+SYAI++KDELERVA+S+R
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
The following BLAST results are available for this feature:
BLAST of FC921799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RS5_NEUCR7.824e-2478.8740S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5B_SCHPO5.071e-2373.2440S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO5.071e-2373.2440S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_CICAR3.287e-2273.2440S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS5_YEAST7.323e-2277.1440S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS51_ARATH7.323e-2271.8340S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_PODCA9.564e-2274.6540S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5_MOUSE9.564e-2274.6540S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_HUMAN9.564e-2274.6540S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN9.564e-2274.6540S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06052E04T7 RindPdigS Citrus sinensis cDNA clone C06052E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921799 ID=FC921799; Name=FC921799; organism=Citrus sinensis; type=EST; length=323bp
CCGTCCGTCGTCCAGCCCTCCATGTGTCTCCCCTCCGTCGCGTGAACCAG
TCCATCTCTCTGCTCACCATCGGTGCCCGCGAGGCTTCTTTCCCCAACAT
CAAGAGCATTGCTGAGTGCCTTGCTGAGGAGCTGATCCACGCCCCCAAGG
GTTCCTCCCACTCCTACGCTATCCAGGAGAAGGATGAGCTCGAGCGTGTT
GCCCAGAGCCACCGGTAAAGGGGTTGTGTTGGATTTGTTCTCCGTATGGT
CCTCTGTTTGCGTATACTGGAGTGGACGGGGGTTTAACCGGGATTCAGTG
GATCCGCATGCATCTGCAAGGCT
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