CX675585

Overview
NameCX675585
Unique NameCX675585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:604..1519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675585 vs. ExPASy Swiss-Prot
Match: PDIA6_MEDSA (Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.958e-72
Identity = 135/177 (76.27%), Postives = 154/177 (87.01%), Query Frame = -3
Query:  384 YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFXTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 914
            YEKVAA F  EDDVV+ANLDADKY+DLAEKY VSGF TLKFFPKGNK GE+YGGGRDL+DFV+FINEK GTSRD KGQLTS AGIV  LD LVKEFVAA+ +EKKAVF++IE  V+ LEGS +R+GKIYLKV+K Y++KGSDYAK EI RL+R+L+KSIS AKADE  LKKNILST+
Sbjct:  187 YEKVAAVFKSEDDVVIANLDADKYRDLAEKYDVSGFPTLKFFPKGNKAGEDYGGGRDLDDFVAFINEKSGTSRDAKGQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEEEVKKLEGSASRYGKIYLKVSKKYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363          
BLAST of CX675585 vs. ExPASy Swiss-Prot
Match: PDIA6_ARATH (Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 7.054e-65
Identity = 126/177 (71.19%), Postives = 143/177 (80.79%), Query Frame = -3
Query:  384 YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFXTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 914
            YEKVA  F  E+ VV+ANLDAD +K L EKYGVSGF TLKFFPK NK G +Y GGRDL+DFVSFINEK GTSRD KGQLTS AGIV SLDALVKE VAAS DEKKAV S+IE     L+GST R+GK+YLK+AK+Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct:  181 YEKVATVFKQEEGVVIANLDADAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGRDLDDFVSFINEKSGTSRDSKGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKSYIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357          
BLAST of CX675585 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.907e-31
Identity = 72/179 (40.22%), Postives = 106/179 (59.22%), Query Frame = -3
Query:  384 YEKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVSGFXTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 914
            YE +   +  E DVV+A +D D    K +  KYGV+GF TLK+F K +KDGE+Y  GRDL+ F+++IN++ G +R   G+L   AG V  LD +  EF+AA+ + +K +  K +  V+ L       G  Y+KV K   +K  D+   EI R+ +++  S+S  KADEF  K NIL +F
Sbjct:  182 YEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYINKQAGVNRVKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360          
BLAST of CX675585 vs. ExPASy Swiss-Prot
Match: ERP38_NEUCR (Protein disulfide-isomerase erp38 OS=Neurospora crassa GN=erp38 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.942e-26
Identity = 71/181 (39.23%), Postives = 104/181 (57.46%), Query Frame = -3
Query:  384 YEKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVSGFXTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGST-ARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDK-SISAAKADEFVLKKNILSTF 914
            +EK+AA F  + ++ +A +DAD    K  A +YGVSGF T+KFFPKG+   E+Y GGR   D V F+NEK GT R   G L + AG +A+LD +V ++    G     V  + +  V+ L+ S   ++   YL+V  + + K   YA KE  RL+ +L K  ++ AK DE  +K N+L  F
Sbjct:  180 WEKLAATFASDPEITIAKVDADAPTGKKSAAEYGVSGFPTIKFFPKGSTTPEDYNGGRSEADLVKFLNEKAGTHRTPGGGLDTVAGTIAALDEIVAKY--TGGASLAEVAEEAKEAVKSLKNSAELKYADYYLRVL-DKLSKSEGYATKEFARLEGILKKGGLAPAKVDELTVKVNVLRKF 357          
BLAST of CX675585 vs. ExPASy Swiss-Prot
Match: PDI2_SCHPO (Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe GN=SPAC17H9.14c PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.680e-23
Identity = 67/179 (37.43%), Postives = 101/179 (56.42%), Query Frame = -3
Query:  384 YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFXTLKFFPKGNKDGEE-YGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRML-DKSISAAKADEFVLKKNILSTF 914
            YE +   F  E +V +  ++AD + D+   + V+ F T+KFFPK +KD  E Y G R LE  + +IN+K GT R   G L STAG + + D    EF+  S   K+ V  K+++    LE S +R  K Y KV +  ++   ++  KE  RL ++L  KSI+ A AD+F  + NIL++F
Sbjct:  180 YETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQRSPDGTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQ--LALEDS-SRWTKYYKKVFEKILN-DENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354          
BLAST of CX675585 vs. ExPASy Swiss-Prot
Match: TIGA_ASPNG (Protein disulfide-isomerase tigA OS=Aspergillus niger GN=tigA PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.139e-22
Identity = 68/180 (37.78%), Postives = 105/180 (58.33%), Query Frame = -3
Query:  384 YEKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVSGFXTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISA-AKADEFVLKKNILSTF 914
            +E +A  F LE +VV+A +DAD    K  A + GVSG+ T+KFFPKG+ +   Y G R  + F+ F+NEK GT R   G L + AG +ASLD L+    AA       + + +++    L+   A++   Y+KVA + + + ++YA KE+ RL+++L K  SA  K D+ + + NIL  F
Sbjct:  179 WEALANDFVLEPNVVIAKVDADAENGKATAREQGVSGYPTIKFFPKGSTESVPYEGARSEQAFIDFLNEKTGTHRTVGGGLDTKAGTIASLDELIASTSAAD------LAAAVKKAATELKDKYAQY---YVKVA-DKLSQNAEYAAKELARLEKILAKGGSAPEKVDDLISRSNILRKF 348          

HSP 2 Score: 72.0182 bits (175), Expect = 5.305e-12
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = -3
Query:  609 YEKVAAAFT-LEDDVVVANLDADKYKDLAEKYGVSGFXTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGD 914
            YE++  AF    D V V  +DAD+++DL  K+GV GF TLK+F   + + E+Y GGRDLE   SFI+EK G    G  +  S   ++   DA  K  V    D
Sbjct:   59 YEELGQAFAHASDKVTVGKVDADEHRDLGRKFGVQGFPTLKWFDGKSDEPEDYKGGRDLESLSSFISEKTGVKPRGPKKEPSKVEMLN--DATFKGAVGGDND 159          
The following BLAST results are available for this feature:
BLAST of CX675585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PDIA6_MEDSA5.958e-7276.27Probable protein disulfide-isomerase A6 OS=Medicag... [more]
PDIA6_ARATH7.054e-6571.19Probable protein disulfide-isomerase A6 OS=Arabido... [more]
PDI1_DICDI3.907e-3140.22Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
ERP38_NEUCR4.942e-2639.23Protein disulfide-isomerase erp38 OS=Neurospora cr... [more]
PDI2_SCHPO6.680e-2337.43Protein disulfide-isomerase C17H9.14c OS=Schizosac... [more]
TIGA_ASPNG1.139e-2237.78Protein disulfide-isomerase tigA OS=Aspergillus ni... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63C09-E17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675585 ID=CX675585; Name=CX675585; organism=Citrus sinensis; type=EST; length=916bp
TTTTTTTAGTTTTTAAGTGCCTCTAAATATGAGTCACTTCTAATTATAGT
TTTTTTTCCATGTTCCTAAATGAAACAAAATAAGTAACTCGGCGGCGACA
TTAACGTTTAGAAACCAGAAAGCATCCCAAAATTGTAACTGTGAACGAAC
GTTTTATCTAAATCATTACACTACCTAATTGTACTTCTCTTAACACAAGT
TTCATCATATGTGGTCATTTATGTCTGAGACCTCAAGATCTTTCCCCGTT
AAAAGAAGCTCTGCTCAAATAAATTCACAGCAACATCAGATGGCTGTGGT
CCATCAATCTCCATAAAGTCGACTTATAGGTAACCCCAGCCCAATTTGAG
ATGAATAAAAAAACATAATCCCACATATTAAGTGAATGTGGATAAAATAT
TTTTCTTGAGGACGAATTCGTCCGCTTTTGCCGCGCTGATTGACTTGTCA
AGCATACGCTGGAGGCGATCAATTTCCTTCTTCGCATAATCACTCCCTTT
GTCCATATAGTTCTTTGCAACTTTCAAGTAAATCTTCCCATGCCTGGCAG
TGGAACCCTCAAGCACCTCAACTCCCCGTTCAATCTTTGAGAAGACTGCC
TTCTTCTCATCACCGCTAGCAGCAACAAATTCCTTCACCAAGGCATCTAA
GCTCGCAACTATACCCGCCGTTGAAGTAAGTTGTCCTTTTCCATCACGAC
TGGTGCCACATTTTTCATTGATGAAAGAAACAAAGTCTTCCAAATCTCTG
CCACCCCCATATTCCTCACCATCTTTGTTGCCTTTTGGAAAGAACTTCAA
TGTANGAAATCCACTAACTCCATACTTCTCAGCCAGATCCTTGTATTTGT
CAGCATCCAAATTAGCAACAACTACATCATCTTCCAATGTAAATGCGGCT
GCCACCTTTTCATATG
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