CX675583

Overview
NameCX675583
Unique NameCX675583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4015 contig Csv1_Contig4015:141..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX675583 vs. ExPASy Swiss-Prot
Match: UGPI5_ARATH (Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.006e-32
Identity = 64/102 (62.75%), Postives = 80/102 (78.43%), Query Frame = 3 
Query:  192 ECSEYLQKTMACLDFARGKITTPSKECCSAVKGIKDDDPKCLCYIIKEANGGEGDMVKNLGVQVPKLLQLPAACQLKNASTSLCPKLLGLSPSSPDAAIFTN 497
            EC++  QK   CLDFA GK T PSK+CC AV+ IK+ DPKCLC++I++A  G G  +K+LGVQ  KL+QLP +CQL NAS + CPKLLG+SPSSPDAA+FTN
Sbjct:   34 ECNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTG-GQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPSSPDAAVFTN 134
The following BLAST results are available for this feature:
BLAST of CX675583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI5_ARATH3.006e-3262.75Uncharacterized GPI-anchored protein At1g27950 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63C07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63C07-E13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675583 ID=CX675583; Name=CX675583; organism=Citrus sinensis; type=EST; length=543bp
GGTTTCAAGTTTTTGACGTTACTTCTATTGAAATTCAATTGACAATAAAA
ATCATTTATCGCAGCAACAAAGGAAAAAGGAAAGAGGGCAAAAGCGAGAA
GATGATGGGAATGAAAAAAGGGTTTCTATGTGGCATATTGTTTGGCTTCA
TAGCGTTAAGGGTTGTAACGGCTGATGACGCTACAAATAAGGAGTGTAGT
GAGTATTTGCAGAAGACGATGGCCTGTTTGGATTTTGCAAGGGGGAAGAT
TACGACTCCGTCCAAAGAATGTTGCAGCGCTGTGAAGGGTATAAAAGACG
ATGATCCAAAGTGTTTGTGTTATATCATCAAGGAGGCTAATGGCGGTGAA
GGCGATATGGTTAAGAACTTGGGCGTGCAGGTGCCTAAGCTGCTTCAGCT
TCCAGCCGCTTGCCAGTTGAAAAATGCCAGCACCAGTCTCTGCCCAAAGC
TTCTAGGGCTATCTCCTAGCTCTCCGGATGCTGCAATATTCACAAATACT
TCTTCATCGGCAACTCCCACTACACCAGCGGCCGCGGGAACAT
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