CK938950 | Citrus Genome Database

Overview


Name	CK938950
Unique Name	CK938950
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	489

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK938950_ssr310	microsatellite	CK938950_ssr310:310..325.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2143	contig	Csv1_Contig2143:1..489.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.984e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.984e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.984e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.984e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.772e-23
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYT 220
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+   T
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMT 64

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.772e-23
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYT 220
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+   T
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMT 64

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.772e-23
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+S
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTS 61

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            LKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+S
Sbjct:    8 LKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTS 61

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYT 220
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS    T
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMT 64

[Close]

BLAST of CK938950 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.845e-23
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 2

Query:   50 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 211
            LKRIE KINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS
Sbjct:    8 LKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS 61

The following BLAST results are available for this feature:

BLAST of CK938950 vs. ExPASy Swiss-Prot

BLAST of CK938950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116


Match Name	E-value	Identity	Description
SEP3_ARATH	1.984e-23	100.00	Developmental protein SEPALLATA 3 OS=Arabidopsis t...	[more]
SEP1_ARATH	1.984e-23	100.00	Developmental protein SEPALLATA 1 OS=Arabidopsis t...	[more]
AGL9_SINAL	1.984e-23	100.00	Agamous-like MADS-box protein AGL9 homolog OS=Sina...	[more]
AGL9_PETHY	1.984e-23	100.00	Agamous-like MADS-box protein AGL9 homolog OS=Petu...	[more]
MADS7_ORYSJ	5.772e-23	92.98	MADS-box transcription factor 7 OS=Oryza sativa su...	[more]
MADS7_ORYSI	5.772e-23	92.98	MADS-box transcription factor 7 OS=Oryza sativa su...	[more]
CMB1_DIACA	5.772e-23	96.30	MADS-box protein CMB1 OS=Dianthus caryophyllus GN=...	[more]
MTF1_PEA	7.538e-23	94.44	MADS-box transcription factor 1 OS=Pisum sativum G...	[more]
MADS8_ORYSJ	7.538e-23	92.98	MADS-box transcription factor 8 OS=Oryza sativa su...	[more]
AGL9_SOLLC	9.845e-23	98.15	Agamous-like MADS-box protein AGL9 homolog OS=Sola...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004436_A12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_A12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK938950 ID=CK938950; Name=CK938950; organism=Citrus sinensis; type=EST; length=489bp
GGGGGAAGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGGTATACGCATATGCACACAGATATGTTATCACCAAAA
CAACTAAACAGCTATAATTAAATGAAAATTATGAAACACAACACAAAAAG
CTCTCTCTTTCTCTCTCTCTCTCTCTTCTCACTTGGCTTAGCTAGGGGGG
GGGGGGGGGCTATGAGAAATTCTTTCTTTTGCTTGGTTTCTTGGTTTGAA
TTCCGACTTTGGATCTTGAAACCATAAGAAAGATTATTTTTTGCTGTTTT
TGATCCTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA