CK938948

Overview
NameCK938948
Unique NameCK938948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2142 contig Csv1_Contig2142:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938948 vs. ExPASy Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:    3 GESEVKPSLSAELRLGVLSDDDSSIKTEYFGLHED-EPNLMTMVEPAESS-MTSPEDWGNFESDGLFDQSSSEY-QWWDFWS 239
            G+SE +  L     L    D +++IKTEYFG  E+ +  LM +VE A+ S +TS E+WG F SD L DQSSS Y  WW+FWS
Sbjct:  154 GKSEPEGRLDQGSVLCNDGDYNNNIKTEYFGFEEETDHELMNIVEKADDSCLTSSENWGGFNSDSLLDQSSSNYPNWWEFWS 235
[Close]
BLAST of CK938948 vs. ExPASy Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 3 
Query:   60 DDDS----SIKTEYFGLHEDEPN-LMTMVEPAESSMTSPEDWGNFESD--GLFDQSSSEYQWWDFWS 239
            DDD+    +IK EYFG  E+EP+ LM +VEPA+S +TS +DW  F+SD   L DQSS+ Y W DFWS
Sbjct:  192 DDDNGYSNNIKREYFGGFEEEPDHLMNIVEPADSCLTSSDDWRGFKSDTTTLLDQSSNNYPWRDFWS 258
The following BLAST results are available for this feature:
BLAST of CK938948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATB12_ARATH5.703e-1248.78Homeobox-leucine zipper protein ATHB-12 OS=Arabido... [more]
ATHB7_ARATH1.659e-1155.22Homeobox-leucine zipper protein ATHB-7 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_C09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938948 ID=CK938948; Name=CK938948; organism=Citrus sinensis; type=EST; length=693bp
GGGGTGAATCAGAAGTGAAGCCAAGCTTGTCAGCAGAACTGAGGCTAGGT
GTTTTGTCAGATGATGATAGCAGTATTAAGACAGAGTATTTTGGACTCCA
TGAAGATGAGCCTAATCTTATGACTATGGTGGAACCTGCAGAGAGTTCCA
TGACTTCACCAGAAGATTGGGGCAATTTTGAGTCAGATGGTCTCTTCGAT
CAATCTAGTAGTGAATATCAGTGGTGGGACTTCTGGTCATGAATCATCCA
CCAAAGGCATTTGTTTTAGCTTATTAAGAAGAGAAATCTCAGTGAACCAT
GATGAGGTGGAGGAATTATTTTGCGGACCATTAATTGAATCTCTATCAGT
TTTTGGTGCCATTGCAAAAGCTGTCAATGAGTCAACAACAACCCCACTTC
ACAAAATCTGCTACATATGCAGTTGCTGTAATAACTGGTTTGGGCCAGGA
ATGAGATGATTTGACTAGTTTAGAGAAGCATTTAGTAGGATTGTGTGTAG
TTAAGTTATAGCTAGCTAGGAAGAGCCTTCAAAGAGCCGGATTGAAGGGC
TTAAATTAGAAAAACATCCGCTTGTTTGTTGGGGTTGGTGCGTATTACTG
TGTAACCAGAGGAAAAAGAGATTGATTCTGCTGCGTTTCCCTCCCAACAA
ATTAAGAGAGATGTCATCCAACATCATTCAGCTAGAGCCTTGG
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