CK938936

Overview
NameCK938936
Unique NameCK938936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13461 contig Csv1_Contig13461:1..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938936 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.141e-42
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:   40 MEEAKGVVKHVLLAKFKEGTAQDQIDQLIKDYANPVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTT 357
            MEEAKG VKHVLLA FK+G + ++I++LIK YAN VNLIEPMK+F WGK+VSIENLHQG+THIFESTFES E VAEY+AHPAHVE+A +FL +L+KVLVIDYKPT+
Sbjct:    1 MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTS 106
[Close]
BLAST of CK938936 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 38/95 (40.00%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:   64 KHVLLAKFKEGTAQDQIDQLIKDYANPVNLIEPMKSFQWGKNV-SIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDY 345
            KH+++ KFKE T   ++D+++K   N V+ I+ +KSF+WG++  S + L QGFTH F  TFE+ +G   + +HP HVE++  F A ++K++++D+
Sbjct:    7 KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDF 98
The following BLAST results are available for this feature:
BLAST of CK938936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POP3_ARATH3.141e-4275.47Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
Y5258_ARATH5.050e-1640.00Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004436_D06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938936 ID=CK938936; Name=CK938936; organism=Citrus sinensis; type=EST; length=604bp
GGGGGCAGCGGATGAAAGCCGAAACGTAAGGGCAGAGATATGGAAGAAGC
TAAAGGAGTGGTGAAGCACGTACTTCTGGCCAAGTTCAAAGAAGGGACTG
CTCAAGATCAAATTGATCAGCTCATCAAAGACTATGCAAATCCTGTGAAT
CTCATTGAACCCATGAAGTCTTTCCAATGGGGCAAGAATGTGAGCATTGA
GAATCTTCATCAGGGTTTCACTCATATTTTTGAATCTACCTTTGAGAGCA
CAGAGGGTGTTGCAGAGTATGTAGCTCATCCAGCACATGTTGAATACGCA
AACTTGTTCCTGGCCAACTTGGAGAAAGTTCTCGTGATTGACTACAAACC
GACAACTGTACGTGTCTGAGTTGTACTAGTAGGGAAGTGATCAGTCTTCC
ATGTGGTTGTTATTTGAATATTGTGTCCGTTTTCTTGAACAATATTGGGT
GACTTCATTTGTATGTGAAATTGATGGTGGTGAAACCCAAGAGTTTATGT
ATTTGGATATAATGATATGACAATAAGGGTAGTTTGAATACTCTCATATT
TATAGATTTTCCTTCTGTCTTGATTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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