CX675578

Overview
NameCX675578
Unique NameCX675578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675578 vs. ExPASy Swiss-Prot
Match: GBF4_ARATH (G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.855e-20
Identity = 58/103 (56.31%), Postives = 66/103 (64.08%), Query Frame = -2 
Query:  457 GGGGRGKRRIVEEPPTDKATQQKQRRMIKNRESAARSRERKQAYTVELESLVTQXXXXXXXXXXXXXEQNKQRFKQLMENLIPVVEKRRPP-RVLRRVNSLHW 762
            GG  RGKR  V     DKA  Q+Q+RMIKNRESAARSRERKQAY VELE+L  +             E  K+R+K+LME LIPV EK RPP R L R +SL W
Sbjct:  168 GGVTRGKRGRVMMEAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEVLIPVDEKPRPPSRPLSRSHSLEW 270
[Close]
BLAST of CX675578 vs. ExPASy Swiss-Prot
Match: ABI5_ARATH (Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = -2 
Query:  493 GGGRGKRRIVEEPPTDKATQQKQRRMIKNRESAARSRERKQAYTVELESLVTQXXXXXXXXXXXXXEQNKQRFKQLMENLIPVVEKRRP 759
            GG RG++R+V+ P  +K  +++QRRMIKNRESAARSR RKQAYTVELE+ + Q             E  ++R +Q  E+L    + + P
Sbjct:  338 GGLRGRKRVVDGP-VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKHALAELERKRKQQYFESLKSRAQPKLP 425
The following BLAST results are available for this feature:
BLAST of CX675578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GBF4_ARATH8.855e-2056.31G-box-binding factor 4 OS=Arabidopsis thaliana GN=... [more]
ABI5_ARATH1.514e-1144.94Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63C03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63C03-E5-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675578 ID=CX675578; Name=CX675578; organism=Citrus sinensis; type=EST; length=763bp
TTTTTAAAAATATTTAAACAAGGTCATCGATTTATATACATATACAAACA
CACGACACATTTAATTAGTACAGGTCGACACATTTAATTAGTACAGGCGG
ACACAGATCAATTGGGGTTTCCTTCCTGCAGCAAAATAAAGAGATCCCGA
GCTTTCCTAAAATGATATTAAGAAAAAGAAAACAAATTTTACAGTGCCCT
AATTAAAATAATCCACTACAAATTTTGTCAGGGATCTCATTAAGCAGTGA
TTTAAACATCCATCTTCAATTTTGATTAAATTATTTAAAGTCTCTGGCTG
CATCAGCTACCAAAGGGAAATTAATCCCGAGCATTTCCCCCCATCTTCAT
CTTATTCTATCTGATATAGTCTCAATGGCAGGCTGCGTAAGCTGCAAAGC
CAGACTATTTCTTTAGTCTAAGCTAACAATTGACGGTTGATAACACACCT
CACCTACCAGTGCAATGAGTTCACTCTTCGAAGAACACGAGGTGGTCTTC
TCTTCTCAACAACAGGAATAAGATTCTCCATGAGCTGCTTAAACCTCTGC
TTGTTCTGCTCAGCCTCTTCCCTCAGCAGCCGTGCTTTCTCCTCCTCCAG
CTGCGTCACCAGCGACTCCAATTCAACTGTGTACGCCTGCTTTCGCTCTC
TGGACCTTGCAGCAGACTCTCGGTTCTTGATCATTCTCCTCTGCTTTTGC
TGAGTTGCCTTATCCGTGGGTGGCTCTTCAACAATTCGCCTCTTCCCTCT
CCCTCCCCCTCCC
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